/var/www/html/cpndb/fasta_results/b15977.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b15977 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b15977
<pre>
  1>>>b15977 552 nt - 552 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0037;  K=2.039e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.220
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b26707',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26707" target=_"blank">b26707</a> Gardnerella vaginalis W11               ( 552) [f] 2760 30.3     4.3 <A HREF="#b26707">align</A>
<a onClick="window.open('getRecord.php?id=b26706',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26706" target=_"blank">b26706</a> Gardnerella vaginalis N95               ( 552) [f] 2760 30.3     4.3 <A HREF="#b26706">align</A>
<a onClick="window.open('getRecord.php?id=b26729',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26729" target=_"blank">b26729</a> ATJN01000029 Gardnerella sp. JCP8017A ( ( 552) [f] 2760 30.3     4.3 <A HREF="#b26729">align</A>
<a onClick="window.open('getRecord.php?id=b26728',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26728" target=_"blank">b26728</a> ATJQ01000044 Gardnerella sp. JCP7659 (G ( 552) [f] 2760 30.3     4.3 <A HREF="#b26728">align</A>
<a onClick="window.open('getRecord.php?id=b28175',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28175" target=_"blank">b28175</a> LRPZ01000046 Gardnerella sp. GED7275B ( ( 552) [f] 2760 30.3     4.3 <A HREF="#b28175">align</A>
<a onClick="window.open('getRecord.php?id=b21783',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21783" target=_"blank">b21783</a> NZ_ADEU01000016 Gardnerella sp. 00703C2 ( 552) [f] 2760 30.3     4.3 <A HREF="#b21783">align</A>
<a onClick="window.open('getRecord.php?id=b26700',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26700" target=_"blank">b26700</a> Gardnerella vaginalis N101              ( 552) [f] 2760 30.3     4.3 <A HREF="#b26700">align</A>
<a onClick="window.open('getRecord.php?id=b26723',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26723" target=_"blank">b26723</a> ATJM01000013 Gardnerella sp. JCP8017B ( ( 552) [f] 2760 30.3     4.3 <A HREF="#b26723">align</A>
<a onClick="window.open('getRecord.php?id=b26704',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26704" target=_"blank">b26704</a> Gardnerella vaginalis N170              ( 552) [f] 2706 30.0     5.3 <A HREF="#b26704">align</A>
<a onClick="window.open('getRecord.php?id=b26730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26730" target=_"blank">b26730</a> ATJO01000122 Gardnerella sp. JCP7719 (G ( 552) [f] 2706 30.0     5.3 <A HREF="#b26730">align</A>
<a onClick="window.open('getRecord.php?id=b26732',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26732" target=_"blank">b26732</a> ATJI01000012 Gardnerella piotii JCP8151 ( 552) [f] 2688 29.9     5.6 <A HREF="#b26732">align</A>
<a onClick="window.open('getRecord.php?id=b26733',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26733" target=_"blank">b26733</a> ATJH01000141 Gardnerella piotii JCP8151 ( 552) [f] 2670 29.8       6 <A HREF="#b26733">align</A>
<a onClick="window.open('getRecord.php?id=b32843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32843" target=_"blank">b32843</a> QJUV01000001 Gardnerella piotii UGent 1 ( 552) [f] 2670 29.8       6 <A HREF="#b32843">align</A>
<a onClick="window.open('getRecord.php?id=b32844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32844" target=_"blank">b32844</a> QJUU01000001 Gardnerella piotii UGent 2 ( 552) [f] 2652 29.7     6.4 <A HREF="#b32844">align</A>
<a onClick="window.open('getRecord.php?id=b26725',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26725" target=_"blank">b26725</a> ATJL01000066 Gardnerella piotii JCP8066 ( 552) [f] 2607 29.5     7.6 <A HREF="#b26725">align</A>
<a onClick="window.open('getRecord.php?id=b26735',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26735" target=_"blank">b26735</a> ATJE01000037 Gardnerella piotii JCP8522 ( 552) [f] 2607 29.5     7.6 <A HREF="#b26735">align</A>
<a onClick="window.open('getRecord.php?id=b26724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26724" target=_"blank">b26724</a> ATJK01000006 Gardnerella piotii JCP8070 ( 552) [f] 2607 29.5     7.6 <A HREF="#b26724">align</A>
<a onClick="window.open('getRecord.php?id=b21784',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21784" target=_"blank">b21784</a> NZ_ADET01000005 Gardnerella vaginalis 0 ( 552) [f] 2598 29.5     7.8 <A HREF="#b21784">align</A>
<a onClick="window.open('getRecord.php?id=b28176',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28176" target=_"blank">b28176</a> LRQA01000029 Gardnerella sp. GED7760B ( ( 552) [f] 2481 28.8      12 <A HREF="#b28176">align</A>
<a onClick="window.open('getRecord.php?id=b26727',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26727" target=_"blank">b26727</a> ATJS01000024 Gardnerella vaginalis JCP7 ( 552) [f] 2278 27.7      26 <A HREF="#b26727">align</A>
</pre><p><hr><p>

>>>b15977, 552 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b26707>
<pre>
>><a onClick="window.open('getRecord.php?id=b26707',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26707" target=_"blank">b26707</a> Gardnerella vaginalis W11                        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26707 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26707 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26706>
<pre>
>><a onClick="window.open('getRecord.php?id=b26706',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26706" target=_"blank">b26706</a> Gardnerella vaginalis N95                        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26706 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26706 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26729>
<pre>
>><a onClick="window.open('getRecord.php?id=b26729',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26729" target=_"blank">b26729</a> ATJN01000029 Gardnerella sp. JCP8017A (Genome s  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26729 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26729 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26728>
<pre>
>><a onClick="window.open('getRecord.php?id=b26728',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26728" target=_"blank">b26728</a> ATJQ01000044 Gardnerella sp. JCP7659 (Genome sp  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26728 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26728 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b28175>
<pre>
>><a onClick="window.open('getRecord.php?id=b28175',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28175" target=_"blank">b28175</a> LRPZ01000046 Gardnerella sp. GED7275B (Genome s  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28175 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b28175 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b21783>
<pre>
>><a onClick="window.open('getRecord.php?id=b21783',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21783" target=_"blank">b21783</a> NZ_ADEU01000016 Gardnerella sp. 00703C2mash (Ge  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21783 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b21783 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26700>
<pre>
>><a onClick="window.open('getRecord.php?id=b26700',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26700" target=_"blank">b26700</a> Gardnerella vaginalis N101                       (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26700 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26700 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26723>
<pre>
>><a onClick="window.open('getRecord.php?id=b26723',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26723" target=_"blank">b26723</a> ATJM01000013 Gardnerella sp. JCP8017B (Genome s  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 110.9  bits: 30.3 E():  4.3
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26723 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26723 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26704>
<pre>
>><a onClick="window.open('getRecord.php?id=b26704',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26704" target=_"blank">b26704</a> Gardnerella vaginalis N170                       (552 nt)
 initn: 2685 init1: 2685 opt: 2706  Z-score: 109.3  bits: 30.0 E():  5.3
banded Smith-Waterman score: 2706; 98.9% identity (98.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::: ::::::::::::::::: :: ::::::::::::::::: :::::::: :: :::
b26704 GCTACTGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAACGTTGTTGCTGGTAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26704 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26704 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26730>
<pre>
>><a onClick="window.open('getRecord.php?id=b26730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26730" target=_"blank">b26730</a> ATJO01000122 Gardnerella sp. JCP7719 (Genome sp  (552 nt)
 initn: 2685 init1: 2685 opt: 2706  Z-score: 109.3  bits: 30.0 E():  5.3
banded Smith-Waterman score: 2706; 98.9% identity (98.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::: ::::::::::::::::: :: ::::::::::::::::: :::::::: :: :::
b26730 GCTACTGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAACGTTGTTGCTGGTAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26730 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26730 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26732>
<pre>
>><a onClick="window.open('getRecord.php?id=b26732',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26732" target=_"blank">b26732</a> ATJI01000012 Gardnerella piotii JCP8151A         (552 nt)
 initn: 2688 init1: 2688 opt: 2688  Z-score: 108.8  bits: 29.9 E():  5.6
banded Smith-Waterman score: 2688; 98.6% identity (98.6% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b26732 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       :: :: ::::::::::: :::::::: :::::::::::::: ::::::::::::::::::
b26732 CTCGCATCTGCTAAAGACGTTGAAACGAAGGATCAAATCGCCGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26732 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b26732 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26732 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26733>
<pre>
>><a onClick="window.open('getRecord.php?id=b26733',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26733" target=_"blank">b26733</a> ATJH01000141 Gardnerella piotii JCP8151B         (552 nt)
 initn: 2670 init1: 2670 opt: 2670  Z-score: 108.3  bits: 29.8 E():    6
banded Smith-Waterman score: 2670; 98.2% identity (98.2% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b26733 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26733 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
b26733 CTTGCGTCTGCTAAAGACGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: :: :::
b26733 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGCCAGGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26733 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: ::::::::::::::::: :::::::::::::::::::::::::::::::::
b26733 ATGCGCTTCGATAAGGGTTACATTTCCCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::: ::::::::::::::::::::::::::::::::::::
b26733 GCTGTTTTGGAAGACCCATACATCTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26733 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26733 GACGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26733 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b32843>
<pre>
>><a onClick="window.open('getRecord.php?id=b32843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32843" target=_"blank">b32843</a> QJUV01000001 Gardnerella piotii UGent 18.01 LMG  (552 nt)
 initn: 2670 init1: 2670 opt: 2670  Z-score: 108.3  bits: 29.8 E():    6
banded Smith-Waterman score: 2670; 98.2% identity (98.2% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b32843 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32843 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
b32843 CTTGCGTCTGCTAAAGACGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: :: :::
b32843 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGCCAGGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32843 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: ::::::::::::::::: :::::::::::::::::::::::::::::::::
b32843 ATGCGCTTCGATAAGGGTTACATTTCCCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::: ::::::::::::::::::::::::::::::::::::
b32843 GCTGTTTTGGAAGACCCATACATCTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32843 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32843 GACGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b32843 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b32844>
<pre>
>><a onClick="window.open('getRecord.php?id=b32844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32844" target=_"blank">b32844</a> QJUU01000001 Gardnerella piotii UGent 21.28 LMG  (552 nt)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 107.8  bits: 29.7 E():  6.4
banded Smith-Waterman score: 2652; 97.8% identity (97.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b32844 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32844 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::: ::::::::::: ::::::::::::::::::::::::::::::::::::::::::
b32844 CTTGCATCTGCTAAAGACGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: :: :::
b32844 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGCCAGGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32844 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: ::::: ::::::::::: :::::::::::::::::::::::::::::::::
b32844 ATGCGCTTCGATAAAGGTTACATTTCCCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b32844 GCTGTTTTGGAAGACCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::: ::::::
b32844 ATTGTTCATGTTGCAGAACTCGTTATGAAGTCTGGTAAGCCATTGCTTATTATCGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32844 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b32844 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26725>
<pre>
>><a onClick="window.open('getRecord.php?id=b26725',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26725" target=_"blank">b26725</a> ATJL01000066 Gardnerella piotii JCP8066          (552 nt)
 initn: 2607 init1: 2607 opt: 2607  Z-score: 106.5  bits: 29.5 E():  7.6
banded Smith-Waterman score: 2607; 96.9% identity (96.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b26725 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26725 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       :: :: ::::::::::: :::::::: :::::::::::::: ::::::::::::::::::
b26725 CTCGCATCTGCTAAAGACGTTGAAACGAAGGATCAAATCGCCGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::: ::::: 
b26725 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCTGAGGCTCTAGATAAGGTTGGCCAAGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b26725 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b26725 ATGCGCTTCGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::: ::::::::::::::::::::::::::::::::::::
b26725 GCTGTTTTGGAAGACCCATACATCTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b26725 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCAGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26725 GACGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26725 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26735>
<pre>
>><a onClick="window.open('getRecord.php?id=b26735',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26735" target=_"blank">b26735</a> ATJE01000037 Gardnerella piotii JCP8522          (552 nt)
 initn: 2607 init1: 2607 opt: 2607  Z-score: 106.5  bits: 29.5 E():  7.6
banded Smith-Waterman score: 2607; 96.9% identity (96.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b26735 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26735 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       :: :: ::::::::::: :::::::: :::::::::::::: ::::::::::::::::::
b26735 CTCGCATCTGCTAAAGACGTTGAAACGAAGGATCAAATCGCCGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::: ::::: 
b26735 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCTGAGGCTCTAGATAAGGTTGGCCAAGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b26735 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b26735 ATGCGCTTCGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::: ::::::::::::::::::::::::::::::::::::
b26735 GCTGTTTTGGAAGACCCATACATCTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b26735 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCAGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26735 GACGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26735 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26724>
<pre>
>><a onClick="window.open('getRecord.php?id=b26724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26724" target=_"blank">b26724</a> ATJK01000006 Gardnerella piotii JCP8070          (552 nt)
 initn: 2607 init1: 2607 opt: 2607  Z-score: 106.5  bits: 29.5 E():  7.6
banded Smith-Waterman score: 2607; 96.9% identity (96.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b26724 GCTACCGTTTTGGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26724 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       :: :: ::::::::::: :::::::: :::::::::::::: ::::::::::::::::::
b26724 CTCGCATCTGCTAAAGACGTTGAAACGAAGGATCAAATCGCCGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::: ::::: 
b26724 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCTGAGGCTCTAGATAAGGTTGGCCAAGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b26724 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b26724 ATGCGCTTCGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: :::::::: ::::::::::::::::::::::::::::::::::::
b26724 GCTGTTTTGGAAGACCCATACATCTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b26724 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCAGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26724 GACGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b26724 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b21784>
<pre>
>><a onClick="window.open('getRecord.php?id=b21784',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21784" target=_"blank">b21784</a> NZ_ADET01000005 Gardnerella vaginalis 00703Bmas  (552 nt)
 initn: 2598 init1: 2598 opt: 2598  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2598; 96.7% identity (96.7% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::: ::::::::::: :: ::::::::::::::::: :::::::::::::::
b21784 GCTACCGTTTTAGCTCAGTCTTTGGTGCACGAAGGCTTAAAGAACGTTGTTGCAGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       :::::::::::::::::::::::::: ::::: ::: : :::::::: :: :::::::::
b21784 AATCCAATTGCTCTTCGCCGCGGCATCGAAAAGGCTGCTGAAGCAATCGTCAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::: ::::: :: :::::::: :: ::::: :: :: :::::::::::::::::::::
b21784 CTTGCTTCTGCAAAGGATGTTGAGACCAAGGAACAGATTGCTGCTACTGCTACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21784 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b21784 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b28176>
<pre>
>><a onClick="window.open('getRecord.php?id=b28176',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28176" target=_"blank">b28176</a> LRQA01000029 Gardnerella sp. GED7760B (Genome s  (552 nt)
 initn: 2481 init1: 2481 opt: 2481  Z-score: 102.8  bits: 28.8 E():   12
banded Smith-Waterman score: 2481; 94.4% identity (94.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::::::::::::::::::::: :::::::::::::::::::: :::::::: ::::::
b28176 GCTACCGTTTTGGCTCAGTCTTTGGTTCACGAAGGCTTAAAGAACGTTGTTGCTGGAAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       :::::::::::::::::: : ::::::::::: :::::::: ::::::::::::::::::
b28176 AATCCAATTGCTCTTCGCAGGGGCATTGAAAAGGCTTCCGAGGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       ::::: ::::: :::::::::::::: :::::::: :: :::::::::::::: ::::::
b28176 CTTGCATCTGCGAAAGATGTTGAAACCAAGGATCAGATTGCTGCTACTGCTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       :: ::::: :::::::::::::::::::::::::::::::::::::::::::: ::::::
b28176 GCAGCCGATCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGCCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       :: :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: 
b28176 GGTGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACCGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::: ::::::::::: :: ::::: :::::::::::::: :: :::::::::::::::
b28176 ATGCGTTTTGATAAGGGCTATATTTCCCCTTACTTTGTAACCAATGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::::::::::: ::::::::::::::::::::::: :::::::::::::::::::::
b28176 GCTGTTTTGGAAGACCCATACATTTTGCTCACTTCTGGTAAGGTTTCTAGCCAGCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::: :::::::::::::::::::: :::::::::::::::::::: :::
b28176 ATTGTTCATGTTGCTGAACTTGTTATGAAGTCTGGAAAGCCATTGCTTATTATTGCAGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b28176 GATGTTGATGGCGAAGCTTTGCCAACGCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::::::::::
b28176 ACTGTAGCTGTT
              550  

</pre>
<hr>
<A name=b26727>
<pre>
>><a onClick="window.open('getRecord.php?id=b26727',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26727" target=_"blank">b26727</a> ATJS01000024 Gardnerella vaginalis JCP7275       (552 nt)
 initn: 2239 init1: 2239 opt: 2278  Z-score: 97.0  bits: 27.7 E():   26
banded Smith-Waterman score: 2278; 90.4% identity (90.4% similar) in 551 nt overlap (1-551:1-551)
<p>

               10        20        30        40        50        60
b15977 GCTACCGTTTTGGCTCAGTCTTTAGTTCACGAAGGCTTAAAGAATGTTGTTGCAGGAAGC
       ::::: :: :::::::: ::::: :: :::::::::::::::::::::::::: :: :::
b26727 GCTACTGTGTTGGCTCAATCTTTGGTGCACGAAGGCTTAAAGAATGTTGTTGCTGGTAGC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15977 AATCCAATTGCTCTTCGCCGCGGCATTGAAAAAGCTTCCGAAGCAATTGTTAAGGAATTG
       :: ::::: :::::::: ::::: :::::::: ::::: :::::::::::::::::::::
b26727 AACCCAATCGCTCTTCGTCGCGGAATTGAAAAGGCTTCAGAAGCAATTGTTAAGGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15977 CTTGCGTCTGCTAAAGATGTTGAAACAAAGGATCAAATCGCTGCTACTGCTACGATTTCT
       :: :: :::::::: ::::::::::: :::::::: :: :: :::::::: :: ::::::
b26727 CTCGCATCTGCTAAGGATGTTGAAACCAAGGATCAGATTGCAGCTACTGCAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15977 GCTGCCGACCCAGAAGTTGGCGAAAAGATTGCAGAAGCTCTAGATAAGGTTGGTCAAGAC
       :: :: :: :: :::::::::::::::::::: :::::: : ::::::::::: ::::::
b26727 GCAGCAGATCCTGAAGTTGGCGAAAAGATTGCTGAAGCTTTGGATAAGGTTGGCCAAGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b15977 GGCGTTGTTACTGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTTACAGAAGGC
       :: :::::::: :::::::::::::::::::::::::::::::::::::: :: ::::: 
b26727 GGTGTTGTTACCGTTGAAGACAACAACAAGTTTGGTCTTGATTTGGACTTCACTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15977 ATGCGCTTTGATAAGGGTTACATTTCTCCTTACTTTGTAACTAACGCAGAAGATCAGACT
       ::::: :::::::::::::: ::::: :::::::: :: ::::: :::::::::::::::
b26727 ATGCGTTTTGATAAGGGTTATATTTCCCCTTACTTCGTCACTAATGCAGAAGATCAGACT
              310       320       330       340       350       360

              370       380       390       400       410       420
b15977 GCTGTTTTGGAAGATCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAAGAC
       :::::: : ::::: ::::::::::::::::::::::::::::::::::::::::: :::
b26727 GCTGTTCTTGAAGACCCATACATTTTGCTCACTTCTGGCAAGGTTTCTAGCCAGCAGGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15977 ATTGTTCATGTTGCAGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCGGAA
       :::::::::::::: ::::::::::::::::::::::::::::::::::::::::: :::
b26727 ATTGTTCATGTTGCTGAACTTGTTATGAAGTCTGGTAAGCCATTGCTTATTATTGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15977 GATGTTGATGGCGAAGCTTTGCCAACTCTTGTTCTTAACAAGATTCGTGGCACTTTCAAC
       ::::::::::::::::: :: :::::::::::::::::::::::::: :: :::::::::
b26727 GATGTTGATGGCGAAGCATTACCAACTCTTGTTCTTAACAAGATTCGCGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15977 ACTGTAGCTGTT
       ::::: :: :: 
b26727 ACTGTTGCAGTA
              550  

</pre>
<hr>
<p><pre>


552 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 03:26:19 2024 done: Mon Jul 22 03:26:21 2024
 Total Scan time:  2.220 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>