/var/www/html/cpndb/fasta_results/b18385.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b18385 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b18385
<pre>
  1>>>b18385 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0052;  K=0.0001218 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.230
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b21173',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21173" target=_"blank">b21173</a> AMOS01000001   Helicobacter pylori R32b ( 555) [f] 2640 32.9    0.75 <A HREF="#b21173">align</A>
<a onClick="window.open('getRecord.php?id=b23496',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23496" target=_"blank">b23496</a> NZ_CADC01000021 Helicobacter pylori BCS ( 555) [f] 2640 32.9    0.75 <A HREF="#b23496">align</A>
<a onClick="window.open('getRecord.php?id=b23440',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23440" target=_"blank">b23440</a> APED01000064 Helicobacter pylori GAM80A ( 555) [f] 2640 32.9    0.75 <A HREF="#b23440">align</A>
<a onClick="window.open('getRecord.php?id=b21175',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21175" target=_"blank">b21175</a> AMOR01000001 Helicobacter pylori R030b  ( 555) [f] 2640 32.9    0.75 <A HREF="#b21175">align</A>
<a onClick="window.open('getRecord.php?id=b23495',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23495" target=_"blank">b23495</a> NZ_CADD01000014 Helicobacter pylori 8A3 ( 555) [f] 2640 32.9    0.75 <A HREF="#b23495">align</A>
<a onClick="window.open('getRecord.php?id=b23434',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23434" target=_"blank">b23434</a> APEI01000042 Helicobacter pylori GAMchJ ( 555) [f] 2631 32.8    0.78 <A HREF="#b23434">align</A>
<a onClick="window.open('getRecord.php?id=b21599',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21599" target=_"blank">b21599</a> CP003906 Helicobacter pylori Rif2       ( 555) [f] 2631 32.8    0.78 <A HREF="#b21599">align</A>
<a onClick="window.open('getRecord.php?id=b23695',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23695" target=_"blank">b23695</a> NZ_AJGJ02000005 Helicobacter pylori NAD ( 555) [f] 2631 32.8    0.78 <A HREF="#b23695">align</A>
<a onClick="window.open('getRecord.php?id=b1265',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1265" target=_"blank">b1265</a> NC_000915 Helicobacter pylori 26695      ( 555) [f] 2631 32.8    0.78 <A HREF="#b1265">align</A>
<a onClick="window.open('getRecord.php?id=b21600',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21600" target=_"blank">b21600</a> CP003905 Helicobacter pylori Rif1       ( 555) [f] 2631 32.8    0.78 <A HREF="#b21600">align</A>
<a onClick="window.open('getRecord.php?id=b24144',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24144" target=_"blank">b24144</a> NZ_AOTV01000001 Helicobacter pylori UMB ( 555) [f] 2622 32.7    0.82 <A HREF="#b24144">align</A>
<a onClick="window.open('getRecord.php?id=b23486',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23486" target=_"blank">b23486</a> NZ_CADM01000021 Helicobacter pylori NQ1 ( 555) [f] 2622 32.7    0.82 <A HREF="#b23486">align</A>
<a onClick="window.open('getRecord.php?id=b23441',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23441" target=_"blank">b23441</a> APEB01000043 Helicobacter pylori GAM42A ( 555) [f] 2622 32.7    0.82 <A HREF="#b23441">align</A>
<a onClick="window.open('getRecord.php?id=b23438',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23438" target=_"blank">b23438</a> APEE01000049 Helicobacter pylori GAM83B ( 555) [f] 2622 32.7    0.82 <A HREF="#b23438">align</A>
<a onClick="window.open('getRecord.php?id=b23437',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23437" target=_"blank">b23437</a> APEF01000071 Helicobacter pylori GAM83T ( 555) [f] 2622 32.7    0.82 <A HREF="#b23437">align</A>
<a onClick="window.open('getRecord.php?id=b23487',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23487" target=_"blank">b23487</a> NZ_CADL01000032 Helicobacter pylori NQ3 ( 555) [f] 2622 32.7    0.82 <A HREF="#b23487">align</A>
<a onClick="window.open('getRecord.php?id=b23418',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23418" target=_"blank">b23418</a> APFC01000057 Helicobacter pylori HP260B ( 555) [f] 2622 32.7    0.82 <A HREF="#b23418">align</A>
<a onClick="window.open('getRecord.php?id=b23485',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23485" target=_"blank">b23485</a> NZ_CADN01000035 Helicobacter pylori NQ4 ( 555) [f] 2622 32.7    0.82 <A HREF="#b23485">align</A>
<a onClick="window.open('getRecord.php?id=b21172',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21172" target=_"blank">b21172</a> AMOT01000001 Helicobacter pylori R036d  ( 555) [f] 2622 32.7    0.82 <A HREF="#b21172">align</A>
<a onClick="window.open('getRecord.php?id=b1321',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1321" target=_"blank">b1321</a> NC_000921 Helicobacter pylori J99        ( 555) [f] 2613 32.6    0.86 <A HREF="#b1321">align</A>
</pre><p><hr><p>

>>>b18385, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b21173>
<pre>
>><a onClick="window.open('getRecord.php?id=b21173',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21173" target=_"blank">b21173</a> AMOS01000001   Helicobacter pylori R32b          (555 nt)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 124.5  bits: 32.9 E(): 0.75
banded Smith-Waterman score: 2640; 97.3% identity (97.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b21173 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b21173 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21173 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21173 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       :::::::::::::::::::: :::::::::::::::::::::::::: ::::: ::::::
b21173 GACGGCGTGATCACCGTTGAGGAAGCTAAGGGCATTGAAGATGAATTGGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b21173 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b21173 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b21173 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21173 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b21173 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23496>
<pre>
>><a onClick="window.open('getRecord.php?id=b23496',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23496" target=_"blank">b23496</a> NZ_CADC01000021 Helicobacter pylori BCS100H1     (555 nt)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 124.5  bits: 32.9 E(): 0.75
banded Smith-Waterman score: 2640; 97.3% identity (97.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23496 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b23496 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23496 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23496 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b23496 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b23496 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23496 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       :::::::: :: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23496 GACATTCTTCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: :::::::::::::::::::::::::::::::::::::::::::: :::
b23496 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTATTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23496 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23440>
<pre>
>><a onClick="window.open('getRecord.php?id=b23440',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23440" target=_"blank">b23440</a> APED01000064 Helicobacter pylori GAM80Ai         (555 nt)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 124.5  bits: 32.9 E(): 0.75
banded Smith-Waterman score: 2640; 97.3% identity (97.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23440 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23440 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATCAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23440 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b23440 GCCAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::::: ::::::::::: 
b23440 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTGGATGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23440 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23440 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23440 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23440 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23440 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21175>
<pre>
>><a onClick="window.open('getRecord.php?id=b21175',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21175" target=_"blank">b21175</a> AMOR01000001 Helicobacter pylori R030b           (555 nt)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 124.5  bits: 32.9 E(): 0.75
banded Smith-Waterman score: 2640; 97.3% identity (97.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b21175 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: :::::::::::::::::::: :::::::::
b21175 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATCAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21175 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21175 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::: ::::: 
b21175 GACGGCGTGATCACCGTTGAAGAGGCTAAGGGCATTGAAGACGAATTAGATGTCGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b21175 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b21175 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::: ::::::::::::::::::::::::::::::::::::::::::
b21175 GACATTCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21175 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b21175 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23495>
<pre>
>><a onClick="window.open('getRecord.php?id=b23495',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23495" target=_"blank">b23495</a> NZ_CADD01000014 Helicobacter pylori 8A3          (555 nt)
 initn: 2640 init1: 2640 opt: 2640  Z-score: 124.5  bits: 32.9 E(): 0.75
banded Smith-Waterman score: 2640; 97.3% identity (97.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23495 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b23495 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23495 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23495 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b23495 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b23495 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23495 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       :::::::: :: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23495 GACATTCTTCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: :::::::::::::::::::::::::::::::::::::::::::: :::
b23495 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTATTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23495 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23434>
<pre>
>><a onClick="window.open('getRecord.php?id=b23434',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23434" target=_"blank">b23434</a> APEI01000042 Helicobacter pylori GAMchJs106B     (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 124.1  bits: 32.8 E(): 0.78
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23434 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: ::::::::::::::::::::::::::::::: :::::::::
b23434 AACCCTATTGAAGTGAAACGAGGCATGGACAAAGCCGCTGAAGCGATCATCAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23434 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23434 GCCAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::: 
b23434 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGATGTCGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23434 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23434 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23434 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23434 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23434 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21599>
<pre>
>><a onClick="window.open('getRecord.php?id=b21599',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21599" target=_"blank">b21599</a> CP003906 Helicobacter pylori Rif2                (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 124.1  bits: 32.8 E(): 0.78
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::: ::::: :::::::::
b21599 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: :::::::::::::: :: ::::::::::::
b21599 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21599 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21599 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: 
b21599 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAACTAGATGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21599 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b21599 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b21599 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21599 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b21599 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23695>
<pre>
>><a onClick="window.open('getRecord.php?id=b23695',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23695" target=_"blank">b23695</a> NZ_AJGJ02000005 Helicobacter pylori NAD1         (555 nt)
 initn: 2625 init1: 2625 opt: 2631  Z-score: 124.1  bits: 32.8 E(): 0.78
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :: ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23695 GCAACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b23695 AACCCTATTGAAGTGAAAAGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::
b23695 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23695 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::: ::::::
b23695 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTGGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23695 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23695 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::: ::::::::::::::::::::::::
b23695 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAAGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23695 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23695 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b1265>
<pre>
>><a onClick="window.open('getRecord.php?id=b1265',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1265" target=_"blank">b1265</a> NC_000915 Helicobacter pylori 26695               (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 124.1  bits: 32.8 E(): 0.78
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::: ::::: :::::::::
b1265  GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: :::::::::::::: :: ::::::::::::
b1265  AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b1265  AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b1265  GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: 
b1265  GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAACTAGATGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1265  GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b1265  ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b1265  GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b1265  GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b1265  AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21600>
<pre>
>><a onClick="window.open('getRecord.php?id=b21600',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21600" target=_"blank">b21600</a> CP003905 Helicobacter pylori Rif1                (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 124.1  bits: 32.8 E(): 0.78
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::: ::::: :::::::::
b21600 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::: :::::::::::::: :: ::::::::::::
b21600 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21600 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21600 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: 
b21600 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAACTAGATGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21600 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b21600 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b21600 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21600 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b21600 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b24144>
<pre>
>><a onClick="window.open('getRecord.php?id=b24144',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24144" target=_"blank">b24144</a> NZ_AOTV01000001 Helicobacter pylori UMB_G1 stra  (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b24144 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::::::::::::::::::::::::::: ::::::::::::::::: :: :::::::::
b24144 AACCCTATTGAAGTGAAAAGAGGCATGGATAAAGCCGCTGAAGCGATTATCAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24144 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::
b24144 GCAAACTCCGATCACAATATTGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::: 
b24144 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGATGTCGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b24144 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b24144 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::: ::::: ::::: ::::::::::::::::::::::::::::::::::::::::::
b24144 GACATCCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b24144 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b24144 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23486>
<pre>
>><a onClick="window.open('getRecord.php?id=b23486',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23486" target=_"blank">b23486</a> NZ_CADM01000021 Helicobacter pylori NQ1671       (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23486 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::: :::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b23486 AACCCCATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::
b23486 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23486 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::: ::::::::::::::
b23486 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAACTAGATGTTGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23486 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23486 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::: ::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23486 GACATCCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23486 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23486 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23441>
<pre>
>><a onClick="window.open('getRecord.php?id=b23441',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23441" target=_"blank">b23441</a> APEB01000043 Helicobacter pylori GAM42Ai         (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23441 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
b23441 AACCCTATTGAAGTGAAACGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::: ::::::::::::::::::::::::::::::
b23441 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAGGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23441 GCCAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::: ::::::
b23441 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23441 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23441 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::: ::::: ::::: ::::::::::::::::::::::::::::::::::::::::::
b23441 GACATCCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b23441 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTGAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23441 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23438>
<pre>
>><a onClick="window.open('getRecord.php?id=b23438',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23438" target=_"blank">b23438</a> APEE01000049 Helicobacter pylori GAM83Bi         (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23438 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
b23438 AACCCTATTGAAGTGAAACGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23438 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b23438 GCCAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: :::::::: :::::::: 
b23438 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23438 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23438 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::: ::::::::::::::::::::::::::::::::::::::::::
b23438 GACATTCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::: ::::::::::::::
b23438 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAACTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23438 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23437>
<pre>
>><a onClick="window.open('getRecord.php?id=b23437',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23437" target=_"blank">b23437</a> APEF01000071 Helicobacter pylori GAM83T          (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23437 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
b23437 AACCCTATTGAAGTGAAACGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23437 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b23437 GCCAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: :::::::: :::::::: 
b23437 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23437 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23437 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::: ::::::::::::::::::::::::::::::::::::::::::
b23437 GACATTCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::: ::::::::::::::
b23437 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAACTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23437 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23487>
<pre>
>><a onClick="window.open('getRecord.php?id=b23487',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23487" target=_"blank">b23487</a> NZ_CADL01000032 Helicobacter pylori NQ367        (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23487 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::: :::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b23487 AACCCCATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::
b23487 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23487 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::: ::::::::::::::
b23487 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAACTAGATGTTGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23487 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23487 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::: ::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23487 GACATCCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23487 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23487 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23418>
<pre>
>><a onClick="window.open('getRecord.php?id=b23418',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23418" target=_"blank">b23418</a> APFC01000057 Helicobacter pylori HP260Bi         (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23418 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
b23418 AACCCTATTGAAGTGAAACGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23418 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :: ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b23418 GCCAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: :::::::: :: ::::: 
b23418 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTAGACGTCGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::: ::::::::::::::::::::::: :::::::::::::::
b23418 GGCATGCAATTTGATAGAGGATACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       ::::: :::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23418 ACCGCCCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23418 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
b23418 GAAGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAACTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23418 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b23485>
<pre>
>><a onClick="window.open('getRecord.php?id=b23485',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23485" target=_"blank">b23485</a> NZ_CADN01000035 Helicobacter pylori NQ4191       (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b23485 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::: :::::::::::: :::::::::: ::::::::::::::::::::::::::::::
b23485 AACCCCATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::: ::::::::::::
b23485 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b23485 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::: ::::::::::::::
b23485 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAACTAGATGTTGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b23485 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACGAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b23485 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::: ::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b23485 GACATCCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23485 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b23485 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21172>
<pre>
>><a onClick="window.open('getRecord.php?id=b21172',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21172" target=_"blank">b21172</a> AMOT01000001 Helicobacter pylori R036d           (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 123.8  bits: 32.7 E(): 0.82
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b21172 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b21172 AACCCTATTGAAGTGAAAAGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: ::::::::::: :::::::::::::::::::::::::: ::::::::::::
b21172 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b21172 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b21172 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b21172 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::: ::::::::::::
b21172 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATTTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b21172 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b21172 GAAGACATTGAGGGCGAAGCTTTAACAACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b21172 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b1321>
<pre>
>><a onClick="window.open('getRecord.php?id=b1321',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1321" target=_"blank">b1321</a> NC_000921 Helicobacter pylori J99                 (555 nt)
 initn: 2607 init1: 2607 opt: 2613  Z-score: 123.4  bits: 32.6 E(): 0.86
banded Smith-Waterman score: 2613; 96.8% identity (96.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b18385 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACCGCTGGGGCT
       :: :::::::::::::::::::::::::::::::::::::: :::::::: :::::::::
b1321  GCAACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGAAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b18385 AACCCTATTGAAGTGAAAAGAGGCATGGACAAAGCCGCTGAAGCGATCATTAATGAGCTT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b1321  AACCCTATTGAAGTGAAAAGAGGCATGGATAAAGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b18385 AAAAAAGCCAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
       :::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::
b1321  AAAAAAGCGAGTAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b18385 GCAAACTCGGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b1321  GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b18385 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTTGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::: ::::::
b1321  GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTGGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b18385 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b1321  GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b18385 ACCGCTCAATTGGATAACGCTTACATTCTTTTGACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::: ::::: :::::::::::::::::::::::::::
b1321  ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b18385 GACATTCTCCCCCTATTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: ::::::::::::::::::::::::::::::::::::::::::::
b1321  GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b18385 GAGGACATTGAAGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :: :::::::: :::::::::::::::::::: :::::::::::::::::::::::::::
b1321  GAAGACATTGAGGGCGAAGCTTTAACGACTCTGGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b18385 AATATCGCAGCGGTT
       :::::::::::::::
b1321  AATATCGCAGCGGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 04:37:55 2024 done: Mon Jul 22 04:37:57 2024
 Total Scan time:  2.230 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>