/var/www/html/cpndb/fasta_results/b17560.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b17560 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b17560
<pre>
  1>>>b17560 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0027;  K=1.899e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.260
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b5483',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5483" target=_"blank">b5483</a> NZ_AADP01000002 Haemophilus influenzae R ( 555) [f] 2757 26.5      61 <A HREF="#b5483">align</A>
<a onClick="window.open('getRecord.php?id=b10128',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10128" target=_"blank">b10128</a> AAZD01000002 Haemophilus influenzae 22. ( 555) [f] 2757 26.5      61 <A HREF="#b10128">align</A>
<a onClick="window.open('getRecord.php?id=b5702',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5702" target=_"blank">b5702</a> NC_007146 Haemophilus influenzae 86-028N ( 555) [f] 2748 26.5      62 <A HREF="#b5702">align</A>
<a onClick="window.open('getRecord.php?id=b18412',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18412" target=_"blank">b18412</a> FQ670204 Haemophilus influenzae F3047   ( 555) [f] 2721 26.4      67 <A HREF="#b18412">align</A>
<a onClick="window.open('getRecord.php?id=b18813',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18813" target=_"blank">b18813</a> AFBC01000006 Haemophilus aegyptius ATCC ( 555) [f] 2721 26.4      67 <A HREF="#b18813">align</A>
<a onClick="window.open('getRecord.php?id=b18413',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18413" target=_"blank">b18413</a> FQ670178 Haemophilus influenzae F3031   ( 555) [f] 2707 26.3      69 <A HREF="#b18413">align</A>
<a onClick="window.open('getRecord.php?id=b33701',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33701" target=_"blank">b33701</a> UGHG01000002 Haemophilus  aegyptius  NC ( 555) [f] 2703 26.3      70 <A HREF="#b33701">align</A>
<a onClick="window.open('getRecord.php?id=b5484',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5484" target=_"blank">b5484</a> CP002276 Haemophilus influenzae R2846    ( 555) [f] 2703 26.3      70 <A HREF="#b5484">align</A>
<a onClick="window.open('getRecord.php?id=b1302',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1302" target=_"blank">b1302</a> NC_000907 Haemophilus influenzae Rd KW20 ( 555) [f] 2676 26.2      76 <A HREF="#b1302">align</A>
<a onClick="window.open('getRecord.php?id=b10134',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10134" target=_"blank">b10134</a> AAZJ01000001 Haemophilus influenzae R30 ( 555) [f] 2658 26.1      79 <A HREF="#b10134">align</A>
<a onClick="window.open('getRecord.php?id=b10127',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10127" target=_"blank">b10127</a> AAZE01000002 Haemophilus influenzae 22. ( 555) [f] 2658 26.1      79 <A HREF="#b10127">align</A>
<a onClick="window.open('getRecord.php?id=b35060',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35060" target=_"blank">b35060</a> NZ_JTLY01000002 Haemophilus haemolyticu ( 555) [f] 2613 25.9      90 <A HREF="#b35060">align</A>
<a onClick="window.open('getRecord.php?id=b29388',
                                'cpndb_record'); return false;" href="getRecord.php?id=b29388" target=_"blank">b29388</a> NZ_MCII02000012 Haemophilus quentini  M ( 555) [f] 2595 25.9      94 <A HREF="#b29388">align</A>
<a onClick="window.open('getRecord.php?id=b19435',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19435" target=_"blank">b19435</a> AFQR01000036  Haemophilus haemolyticus  ( 555) [f] 2595 25.9      94 <A HREF="#b19435">align</A>
<a onClick="window.open('getRecord.php?id=b19438',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19438" target=_"blank">b19438</a> AFQO01000016 Haemophilus haemolyticus M ( 555) [f] 2595 25.9      94 <A HREF="#b19438">align</A>
<a onClick="window.open('getRecord.php?id=b19434',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19434" target=_"blank">b19434</a> AFQQ01000001 Haemophilus haemolyticus M ( 555) [f] 2572 25.8   1e+02 <A HREF="#b19434">align</A>
<a onClick="window.open('getRecord.php?id=b10126',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10126" target=_"blank">b10126</a> AAZF01000007 Haemophilus influenzae 365 ( 555) [f] 2550 25.7 1.1e+02 <A HREF="#b10126">align</A>
<a onClick="window.open('getRecord.php?id=b19436',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19436" target=_"blank">b19436</a> AFQP01000022 Haemophilus haemolyticus M ( 555) [f] 2550 25.7 1.1e+02 <A HREF="#b19436">align</A>
<a onClick="window.open('getRecord.php?id=b20420',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20420" target=_"blank">b20420</a> NZ_AGRK01000030 Haemophilus sp. oral ta ( 555) [f] 2541 25.7 1.1e+02 <A HREF="#b20420">align</A>
<a onClick="window.open('getRecord.php?id=b27874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27874" target=_"blank">b27874</a> CP005967 Haemophilus  influenzae  KR494 ( 555) [f] 2505 25.5 1.2e+02 <A HREF="#b27874">align</A>
</pre><p><hr><p>

>>>b17560, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b5483>
<pre>
>><a onClick="window.open('getRecord.php?id=b5483',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5483" target=_"blank">b5483</a> NZ_AADP01000002 Haemophilus influenzae R2866      (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 90.2  bits: 26.5 E():   61
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b5483  GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5483  GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b5483  AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b10128>
<pre>
>><a onClick="window.open('getRecord.php?id=b10128',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10128" target=_"blank">b10128</a> AAZD01000002 Haemophilus influenzae 22.1-21      (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 90.2  bits: 26.5 E():   61
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b10128 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10128 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b10128 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b5702>
<pre>
>><a onClick="window.open('getRecord.php?id=b5702',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5702" target=_"blank">b5702</a> NC_007146 Haemophilus influenzae 86-028NP         (555 nt)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 90.0  bits: 26.5 E():   62
banded Smith-Waterman score: 2748; 99.5% identity (99.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::
b5702  GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5702  GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b5702  GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b5702  AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b18412>
<pre>
>><a onClick="window.open('getRecord.php?id=b18412',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18412" target=_"blank">b18412</a> FQ670204 Haemophilus influenzae F3047            (555 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 89.5  bits: 26.4 E():   67
banded Smith-Waterman score: 2721; 98.9% identity (98.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::
b18412 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b18412 GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18412 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b18412 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b18813>
<pre>
>><a onClick="window.open('getRecord.php?id=b18813',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18813" target=_"blank">b18813</a> AFBC01000006 Haemophilus aegyptius ATCC 11116    (555 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 89.5  bits: 26.4 E():   67
banded Smith-Waterman score: 2721; 98.9% identity (98.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::
b18813 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b18813 GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18813 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b18813 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b18413>
<pre>
>><a onClick="window.open('getRecord.php?id=b18413',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18413" target=_"blank">b18413</a> FQ670178 Haemophilus influenzae F3031            (555 nt)
 initn: 2707 init1: 2707 opt: 2707  Z-score: 89.2  bits: 26.3 E():   69
banded Smith-Waterman score: 2707; 98.7% identity (98.7% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18413 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18413 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b18413 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::::
b18413 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18413 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18413 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18413 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::::::::::::::: :: :::::::::::::::::::::::::::::::::
b18413 GAATTACTTCCTGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b18413 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTGGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::: 
b18413 AAAGTTGCAGCAGTA
              550     

</pre>
<hr>
<A name=b33701>
<pre>
>><a onClick="window.open('getRecord.php?id=b33701',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33701" target=_"blank">b33701</a> UGHG01000002 Haemophilus  aegyptius  NCTC8135    (555 nt)
 initn: 2692 init1: 2692 opt: 2703  Z-score: 89.1  bits: 26.3 E():   70
banded Smith-Waterman score: 2703; 98.6% identity (98.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b33701 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b33701 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b33701 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b33701 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b33701 GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b33701 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
b33701 ACGGTTGAATTAGATAATCCATATCTTCTTCTTATAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b33701 GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b33701 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACGATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b33701 AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<A name=b5484>
<pre>
>><a onClick="window.open('getRecord.php?id=b5484',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5484" target=_"blank">b5484</a> CP002276 Haemophilus influenzae R2846             (555 nt)
 initn: 2703 init1: 2703 opt: 2703  Z-score: 89.1  bits: 26.3 E():   70
banded Smith-Waterman score: 2703; 98.6% identity (98.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b5484  GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5484  ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b5484  GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::::::::::::::::::::::::::::::::: :: :::::::::::::::::::::
b5484  GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::: :::::::::
b5484  AAAGTGGCAGCAGTG
              550     

</pre>
<hr>
<A name=b1302>
<pre>
>><a onClick="window.open('getRecord.php?id=b1302',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1302" target=_"blank">b1302</a> NC_000907 Haemophilus influenzae Rd KW20 ATCC 51  (555 nt)
 initn: 2665 init1: 2665 opt: 2676  Z-score: 88.5  bits: 26.2 E():   76
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1302  GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1302  AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b1302  AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b1302  GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1302  GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1302  GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1302  ACCGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b1302  GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       ::::: ::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b1302  GAAGACGTGGAAGGCGAAGCGCTTGCAACCTTAGTGGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b1302  AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<A name=b10134>
<pre>
>><a onClick="window.open('getRecord.php?id=b10134',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10134" target=_"blank">b10134</a> AAZJ01000001 Haemophilus influenzae R3021        (555 nt)
 initn: 2631 init1: 2631 opt: 2658  Z-score: 88.1  bits: 26.1 E():   79
banded Smith-Waterman score: 2658; 97.7% identity (97.7% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::: :: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10134 GCAACAGTTCTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :::::::::::::::::::::::::: :::::::: :::::::::::::::::::: :::
b10134 AATCCAATGGATTTAAAACGTGGTATAGATAAAGCGGTAAGTGCGGTTGTTTCTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b10134 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b10134 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10134 GAAGGTGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10134 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10134 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b10134 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::
b10134 GAAGATGTTGAAGGCGAAGCACTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b10134 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b10127>
<pre>
>><a onClick="window.open('getRecord.php?id=b10127',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10127" target=_"blank">b10127</a> AAZE01000002 Haemophilus influenzae 22.4-21      (555 nt)
 initn: 2647 init1: 2647 opt: 2658  Z-score: 88.1  bits: 26.1 E():   79
banded Smith-Waterman score: 2658; 97.7% identity (97.7% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10127 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10127 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::  : :::::::::::::::::::: :: ::::::
b10127 AAAAATTTATCTAAACCTTGTGAAACCTCTAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b10127 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10127 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10127 GGTATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10127 ACTGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: :::::::::::::::::::::::::::::::::
b10127 GAATTACTTCCCGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b10127 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACGATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b10127 AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<A name=b35060>
<pre>
>><a onClick="window.open('getRecord.php?id=b35060',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35060" target=_"blank">b35060</a> NZ_JTLY01000002 Haemophilus haemolyticus ATCC 3  (555 nt)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 87.2  bits: 25.9 E():   90
banded Smith-Waterman score: 2613; 96.8% identity (96.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::: ::::::::::::::::::::::: :: ::::: :::
b35060 GCAACTGTACTTGCGCAAGCTATTGTAAATGAAGGCTTGAAAGCAGTCGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :: ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b35060 AACCCAATGGATTTAAAACGTGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35060 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::: 
b35060 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       :::::::: :::::::::::::::::::: ::::::::::::::::::::::::::::::
b35060 GAAGGGGTGATTACTGTTGAAGATGGTACTGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b35060 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35060 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b35060 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::: :::::::::::::::::::: :: :::::::::::::::::::::
b35060 GAAGATGTGGAAGGTGAAGCGCTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b35060 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b29388>
<pre>
>><a onClick="window.open('getRecord.php?id=b29388',
                                'cpndb_record'); return false;" href="getRecord.php?id=b29388" target=_"blank">b29388</a> NZ_MCII02000012 Haemophilus quentini  MP1        (555 nt)
 initn: 2595 init1: 2595 opt: 2595  Z-score: 86.8  bits: 25.9 E():   94
banded Smith-Waterman score: 2595; 96.4% identity (96.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: :::
b29388 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::: :::::::::::::: ::::: :::::::::::::::::::::::::::::::::
b29388 AATCCTATGGATTTAAAACGCGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b29388 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: :::::::::::::: :: 
b29388 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b29388 GAAGGCGTGATTACCGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b29388 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b29388 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b29388 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: :::::::::::::: :: :::::::::::::::::::: 
b29388 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTA
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b29388 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b19435>
<pre>
>><a onClick="window.open('getRecord.php?id=b19435',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19435" target=_"blank">b19435</a> AFQR01000036  Haemophilus haemolyticus M21639    (555 nt)
 initn: 2595 init1: 2595 opt: 2595  Z-score: 86.8  bits: 25.9 E():   94
banded Smith-Waterman score: 2595; 96.4% identity (96.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: :::
b19435 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       ::::: :::::::::::::: ::::: :::::::::::::::::::::::::::::::::
b19435 AATCCTATGGATTTAAAACGCGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19435 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: :::::::::::::: :: 
b19435 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b19435 GAAGGCGTGATTACCGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b19435 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19435 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b19435 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: :::::::::::::: :: :::::::::::::::::::: 
b19435 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTA
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b19435 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b19438>
<pre>
>><a onClick="window.open('getRecord.php?id=b19438',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19438" target=_"blank">b19438</a> AFQO01000016 Haemophilus haemolyticus M19501     (555 nt)
 initn: 2584 init1: 2584 opt: 2595  Z-score: 86.8  bits: 25.9 E():   94
banded Smith-Waterman score: 2595; 96.4% identity (96.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       ::::::::::::::::::::::::::::::::::: :::::::::::::: ::::: :::
b19438 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGATTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b19438 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b19438 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::::::::: ::::::::::::::::: 
b19438 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCACAAGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19438 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19438 GGTATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       :: :::::::::::::::::::::::::::::::: :::::::::::::::::::: :::
b19438 ACCGTTGAATTAGATAATCCATATCTTCTTCTTGTTGATAAAAAAATCTCTAACATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: ::::::::::::::::::::::::::::: :::
b19438 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: :::::::::::::: :: :::::::::::::::::::::
b19438 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b19438 AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<A name=b19434>
<pre>
>><a onClick="window.open('getRecord.php?id=b19434',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19434" target=_"blank">b19434</a> AFQQ01000001 Haemophilus haemolyticus M21621     (555 nt)
 initn: 2566 init1: 2566 opt: 2572  Z-score: 86.3  bits: 25.8 E(): 1e+02
banded Smith-Waterman score: 2572; 96.0% identity (96.0% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: :: :::
b19434 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCTGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b19434 AATCCAATGGATTTAAAACGTGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19434 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: :::::::: :::::::: ::::::::::::::::: 
b19434 GCAAACTCTGACAGCATTGTGGGTCAATTAATTTCACAAGCGATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: ::::::::::: :: ::::::::::::::::::::::::::::::
b19434 GAAGGTGTGATTACCGTTGAAGATGGCACAGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b19434 GGGATGCAATTCGACCGTGGTTACCTTTCTCCATACTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19434 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: ::::::::::::::::::::::::::::: :::
b19434 GAATTACTTCCAGTGTTAGAAGGGGTTGCGAAAGCAGGTAAACCGTTATTAATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: ::::::::::::::::: :::::::::::::::::::::
b19434 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTAGTGAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :: 
b19434 AAAGTTGCAGCCGTA
              550     

</pre>
<hr>
<A name=b10126>
<pre>
>><a onClick="window.open('getRecord.php?id=b10126',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10126" target=_"blank">b10126</a> AAZF01000007 Haemophilus influenzae 3655         (555 nt)
 initn: 2550 init1: 2550 opt: 2550  Z-score: 85.8  bits: 25.7 E(): 1.1e+02
banded Smith-Waterman score: 2550; 95.5% identity (95.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::: ::::::::::::::::::::::::::::::::::::::::: :::::::::
b10126 GCAACTGTGCTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCAGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10126 AACCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b10126 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::::: ::::: :::::::::::::: :: 
b10126 GCAAACTCTGACAGCATTGTGGGTCAATTAATCTCGCAAGCGATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b10126 GAAGGCGTGATTACCGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b10126 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b10126 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: ::::::::::: :: ::::::::::::::::: :::::::::::::::
b10126 GAATTACTTCCGGTGTTAGAAGGCGTTGCGAAAGCAGGTAAACCATTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: ::::::::::::::::: ::::: ::::: :::::::::
b10126 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTAGTGAACACGATGCGTGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::: :::::::::
b10126 AAAGTGGCAGCAGTG
              550     

</pre>
<hr>
<A name=b19436>
<pre>
>><a onClick="window.open('getRecord.php?id=b19436',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19436" target=_"blank">b19436</a> AFQP01000022 Haemophilus haemolyticus M21127     (555 nt)
 initn: 2539 init1: 2539 opt: 2550  Z-score: 85.8  bits: 25.7 E(): 1.1e+02
banded Smith-Waterman score: 2550; 95.5% identity (95.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: :::
b19436 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :::::::::::::::::::::::::: ::::::::::::::::::::::::::::: :::
b19436 AATCCAATGGATTTAAAACGTGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::: :::::::::::::::::::: :: ::::::
b19436 AAAAATTTATCTAAACCTTGTGAAACAGCGAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       :::::::::::::::::::: :: ::::::::::::::::: :::::::::::::: :: 
b19436 GCAAACTCTGACAGCATTGTAGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b19436 GAAGGCGTGATTACCGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b19436 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::: :::::::::::::::::::: :::
b19436 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTTGATAAAAAAATCTCTAACATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b19436 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::: :::::::::::::::::::: :: :::::::::::::::::::::
b19436 GAAGATGTGGAAGGTGAAGCGCTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTG
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b19436 AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<A name=b20420>
<pre>
>><a onClick="window.open('getRecord.php?id=b20420',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20420" target=_"blank">b20420</a> NZ_AGRK01000030 Haemophilus sp. oral taxon 851   (555 nt)
 initn: 2541 init1: 2541 opt: 2541  Z-score: 85.6  bits: 25.7 E(): 1.1e+02
banded Smith-Waterman score: 2541; 95.3% identity (95.3% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::::::::::::::::::::::::::::::::::::::::::::: ::::: :::
b20420 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :::::::::::::::::::::::::: ::::::::::::::::::::::::::::: :::
b20420 AATCCAATGGATTTAAAACGTGGTATCGATAAAGCAGTAAGTGCGGTTGTTTCTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::: :: :: ::::::
b20420 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTCGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::: ::::::::: ::::::::::::::::: :::::::::::::: :: 
b20420 GCAAACTCTGACAACATTGTGGGTCAATTAATCTCACAAGCGATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: ::::: ::::::::::::::::: :::::::::::::::::::::::::::
b20420 GAAGGCGTGATTACCGTTGAAGATGGTACGGGGCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b20420 GGGATGCAATTCGATCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::: :::::::::::::::::::: :::
b20420 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTTGATAAAAAAATCTCTAACATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :::::::::::::::::::::::::::::::::
b20420 GAATTACTTCCAGTGTTAGAAGGTGTTGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: :::::::::::::: :: :::::::::::::::::::: 
b20420 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTGGTGAACACTATGCGCGGTATCGTA
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       :::::::::::::::
b20420 AAAGTTGCAGCAGTG
              550     

</pre>
<hr>
<A name=b27874>
<pre>
>><a onClick="window.open('getRecord.php?id=b27874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27874" target=_"blank">b27874</a> CP005967 Haemophilus  influenzae  KR494          (555 nt)
 initn: 2494 init1: 2494 opt: 2505  Z-score: 84.9  bits: 25.5 E(): 1.2e+02
banded Smith-Waterman score: 2505; 94.6% identity (94.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b17560 GCAACTGTACTTGCGCAAGCTATCGTAAATGAAGGCTTGAAAGCAGTAGCTGCAGGTATG
       :::::::: ::::: ::::::::::::::::: :: :::::::::::::: ::::: :::
b27874 GCAACTGTGCTTGCTCAAGCTATCGTAAATGAGGGATTGAAAGCAGTAGCGGCAGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17560 AATCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAACTT
       :: ::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
b27874 AACCCAATGGATTTAAAACGTGGTATTGATAAAGCAGTAAGTGCGGTTGTTTCTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17560 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGTACCATTTCT
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b27874 AAAAATTTATCTAAACCTTGTGAAACAGCAAAAGAAATTGAACAAGTAGGGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17560 GCAAACTCTGACAGCATTGTGGGGCAATTAATCTCACAAGCAATGGAAAAAGTGGGCAAG
       ::::::::::::::::::::::: ::::::::  : ::::: ::::::::::::::::: 
b27874 GCAAACTCTGACAGCATTGTGGGTCAATTAATTGCTCAAGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17560 GAAGGGGTAATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
       ::::: :: :::::::::::::::::::::::::::::::::::::::::::::::::::
b27874 GAAGGCGTGATTACTGTTGAAGATGGTACGGGTCTTGAAGATGAATTAGATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17560 GGCATGCAATTCGACCGTGGTTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
       :: ::::::::::: ::::: :::::::::::::::::::::::::::::::::::::::
b27874 GGGATGCAATTCGATCGTGGCTACCTTTCTCCATATTTCATCAACAAACCAGAAACTGCA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17560 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27874 ACGGTTGAATTAGATAATCCATATCTTCTTCTTGTAGATAAAAAAATCTCTAACATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b17560 GAATTACTTCCTGTGTTAGAAGGTGTAGCGAAAGCAGGTAAACCGTTATTAATCATCGCT
       ::::::::::: :::::::::::::: :: :::::::::::::: :::::::::::::::
b27874 GAATTACTTCCAGTGTTAGAAGGTGTTGCAAAAGCAGGTAAACCATTATTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17560 GAAGATGTGGAAGGCGAAGCGCTTGCAACCTTAGTAGTAAACACTATGCGCGGTATCGTG
       :::::::::::::::::::: ::::::::::::::::: ::::: :::::::::::::: 
b27874 GAAGATGTGGAAGGCGAAGCACTTGCAACCTTAGTAGTGAACACGATGCGCGGTATCGTA
              490       500       510       520       530       540

              550     
b17560 AAAGTTGCAGCAGTG
       ::::::::::: :::
b27874 AAAGTTGCAGCCGTG
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 04:28:53 2024 done: Mon Jul 22 04:28:56 2024
 Total Scan time:  2.260 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>