/var/www/html/cpndb/fasta_results/b13809.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b13809 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b13809
<pre>
  1>>>b13809 552 nt - 552 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0034;  K=1.462e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.250
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b19938',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19938" target=_"blank">b19938</a> CP002095 Mycobacterium bovis BCG str. M ( 552) [f] 2760 29.5     7.8 <A HREF="#b19938">align</A>
<a onClick="window.open('getRecord.php?id=b19303',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19303" target=_"blank">b19303</a> CP001641  Mycobacterium tuberculosis CC ( 552) [f] 2760 29.5     7.8 <A HREF="#b19303">align</A>
<a onClick="window.open('getRecord.php?id=b19284',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19284" target=_"blank">b19284</a> NC_015758 Mycobacterium africanum GM041 ( 552) [f] 2760 29.5     7.8 <A HREF="#b19284">align</A>
<a onClick="window.open('getRecord.php?id=b23030',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23030" target=_"blank">b23030</a> NC_020245 Mycobacterium bovis BCG str.  ( 552) [f] 2760 29.5     7.8 <A HREF="#b23030">align</A>
<a onClick="window.open('getRecord.php?id=b4154',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4154" target=_"blank">b4154</a> NC_002945 Mycobacterium bovis subsp. bov ( 552) [f] 2760 29.5     7.8 <A HREF="#b4154">align</A>
<a onClick="window.open('getRecord.php?id=b19374',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19374" target=_"blank">b19374</a> AM412059 Mycobacterium bovis BCG str. M ( 552) [f] 2760 29.5     7.8 <A HREF="#b19374">align</A>
<a onClick="window.open('getRecord.php?id=b10122',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10122" target=_"blank">b10122</a> DS016977 Mycobacterium tuberculosis str ( 552) [f] 2760 29.5     7.8 <A HREF="#b10122">align</A>
<a onClick="window.open('getRecord.php?id=b28239',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28239" target=_"blank">b28239</a> NZ_AWPL01000063 Mycobacterium  bovis  A ( 552) [f] 2760 29.5     7.8 <A HREF="#b28239">align</A>
<a onClick="window.open('getRecord.php?id=b28237',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28237" target=_"blank">b28237</a> NZ_AVSW01000138 Mycobacterium  bovis  0 ( 552) [f] 2760 29.5     7.8 <A HREF="#b28237">align</A>
<a onClick="window.open('getRecord.php?id=b7802',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7802" target=_"blank">b7802</a> NZ_AAKR01000150 Mycobacterium tuberculos ( 552) [f] 2760 29.5     7.8 <A HREF="#b7802">align</A>
<a onClick="window.open('getRecord.php?id=b1445',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1445" target=_"blank">b1445</a> NC_000962 Mycobacterium tuberculosis H37 ( 552) [f] 2760 29.5     7.8 <A HREF="#b1445">align</A>
<a onClick="window.open('getRecord.php?id=b20548',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20548" target=_"blank">b20548</a> AP012340 Mycobacterium tuberculosis Erd ( 552) [f] 2760 29.5     7.8 <A HREF="#b20548">align</A>
<a onClick="window.open('getRecord.php?id=b26316',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26316" target=_"blank">b26316</a> NC_021194 Mycobacterium tuberculosis EA ( 552) [f] 2760 29.5     7.8 <A HREF="#b26316">align</A>
<a onClick="window.open('getRecord.php?id=b24314',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24314" target=_"blank">b24314</a> APKD01000075 Mycobacterium orygis 11240 ( 552) [f] 2760 29.5     7.8 <A HREF="#b24314">align</A>
<a onClick="window.open('getRecord.php?id=b10020',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10020" target=_"blank">b10020</a> NC_008769 Mycobacterium bovis BCG str.  ( 552) [f] 2760 29.5     7.8 <A HREF="#b10020">align</A>
<a onClick="window.open('getRecord.php?id=b18780',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18780" target=_"blank">b18780</a> GL877853 Mycobacterium tuberculosis W-1 ( 552) [f] 2760 29.5     7.8 <A HREF="#b18780">align</A>
<a onClick="window.open('getRecord.php?id=b32133',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32133" target=_"blank">b32133</a> NZ_MWXD01000056 Mycobacterium  caprae   ( 552) [f] 2760 29.5     7.8 <A HREF="#b32133">align</A>
<a onClick="window.open('getRecord.php?id=b1286',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1286" target=_"blank">b1286</a> NC_002755 Mycobacterium tuberculosis CDC ( 552) [f] 2760 29.5     7.8 <A HREF="#b1286">align</A>
<a onClick="window.open('getRecord.php?id=b26209',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26209" target=_"blank">b26209</a> NC_021054 Mycobacterium tuberculosis Be ( 552) [f] 2760 29.5     7.8 <A HREF="#b26209">align</A>
<a onClick="window.open('getRecord.php?id=b7724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7724" target=_"blank">b7724</a> CP000717 Mycobacterium tuberculosis F11  ( 552) [f] 2760 29.5     7.8 <A HREF="#b7724">align</A>
</pre><p><hr><p>

>>>b13809, 552 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b19938>
<pre>
>><a onClick="window.open('getRecord.php?id=b19938',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19938" target=_"blank">b19938</a> CP002095 Mycobacterium bovis BCG str. Mexico     (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19938 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b19938 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b19303>
<pre>
>><a onClick="window.open('getRecord.php?id=b19303',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19303" target=_"blank">b19303</a> CP001641  Mycobacterium tuberculosis CCDC5079    (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19303 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b19303 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b19284>
<pre>
>><a onClick="window.open('getRecord.php?id=b19284',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19284" target=_"blank">b19284</a> NC_015758 Mycobacterium africanum GM041182       (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19284 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b19284 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b23030>
<pre>
>><a onClick="window.open('getRecord.php?id=b23030',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23030" target=_"blank">b23030</a> NC_020245 Mycobacterium bovis BCG str. Korea 11  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23030 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b23030 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b4154>
<pre>
>><a onClick="window.open('getRecord.php?id=b4154',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4154" target=_"blank">b4154</a> NC_002945 Mycobacterium bovis subsp. bovis AF212  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4154  GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b4154  GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b19374>
<pre>
>><a onClick="window.open('getRecord.php?id=b19374',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19374" target=_"blank">b19374</a> AM412059 Mycobacterium bovis BCG str. Moreau RD  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19374 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b19374 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b10122>
<pre>
>><a onClick="window.open('getRecord.php?id=b10122',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10122" target=_"blank">b10122</a> DS016977 Mycobacterium tuberculosis strain Haar  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10122 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b10122 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b28239>
<pre>
>><a onClick="window.open('getRecord.php?id=b28239',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28239" target=_"blank">b28239</a> NZ_AWPL01000063 Mycobacterium  bovis  AN5        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28239 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b28239 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b28237>
<pre>
>><a onClick="window.open('getRecord.php?id=b28237',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28237" target=_"blank">b28237</a> NZ_AVSW01000138 Mycobacterium  bovis  04-303     (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28237 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b28237 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b7802>
<pre>
>><a onClick="window.open('getRecord.php?id=b7802',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7802" target=_"blank">b7802</a> NZ_AAKR01000150 Mycobacterium tuberculosis C      (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7802  GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b7802  GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b1445>
<pre>
>><a onClick="window.open('getRecord.php?id=b1445',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1445" target=_"blank">b1445</a> NC_000962 Mycobacterium tuberculosis H37Rv        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1445  GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b1445  GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b20548>
<pre>
>><a onClick="window.open('getRecord.php?id=b20548',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20548" target=_"blank">b20548</a> AP012340 Mycobacterium tuberculosis Erdman ATCC  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20548 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b20548 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b26316>
<pre>
>><a onClick="window.open('getRecord.php?id=b26316',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26316" target=_"blank">b26316</a> NC_021194 Mycobacterium tuberculosis EAI5/NITR2  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26316 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b26316 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b24314>
<pre>
>><a onClick="window.open('getRecord.php?id=b24314',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24314" target=_"blank">b24314</a> APKD01000075 Mycobacterium orygis 112400015      (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24314 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b24314 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b10020>
<pre>
>><a onClick="window.open('getRecord.php?id=b10020',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10020" target=_"blank">b10020</a> NC_008769 Mycobacterium bovis BCG str. Pasteur   (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10020 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b10020 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b18780>
<pre>
>><a onClick="window.open('getRecord.php?id=b18780',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18780" target=_"blank">b18780</a> GL877853 Mycobacterium tuberculosis W-148        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18780 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b18780 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b32133>
<pre>
>><a onClick="window.open('getRecord.php?id=b32133',
                                'cpndb_record'); return false;" href="getRecord.php?id=b32133" target=_"blank">b32133</a> NZ_MWXD01000056 Mycobacterium  caprae  ATCC BAA  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b32133 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b32133 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b1286>
<pre>
>><a onClick="window.open('getRecord.php?id=b1286',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1286" target=_"blank">b1286</a> NC_002755 Mycobacterium tuberculosis CDC1551      (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1286  GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b1286  GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b26209>
<pre>
>><a onClick="window.open('getRecord.php?id=b26209',
                                'cpndb_record'); return false;" href="getRecord.php?id=b26209" target=_"blank">b26209</a> NC_021054 Mycobacterium tuberculosis Beijing/NI  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b26209 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b26209 GCGGTCGCGGTC
              550  

</pre>
<hr>
<A name=b7724>
<pre>
>><a onClick="window.open('getRecord.php?id=b7724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7724" target=_"blank">b7724</a> CP000717 Mycobacterium tuberculosis F11           (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 106.2  bits: 29.5 E():  7.8
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13809 GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  GCAACCATCTTGGCGCAGGCACTGATCAAGGGCGGCCTGAGGCTAGTGGCCGCCGGCGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
b13809 AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  AACCCGATCGCGCTCGGCGTGGGAATCGGCAAGGCCGCCGACGCGGTATCCGAGGCGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b13809 CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  CTGGCATCGGCCACGCCGGTGTCCGGCAAGACCGGCATCGCGCAGGTGGCGACGGTGTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b13809 TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  TCGCGCGACGAGCAGATCGGTGACCTGGTTGGCGAAGCGATGAGCAAGGTCGGCCACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13809 GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  GGCGTGGTCAGCGTCGAAGAATCCTCGACGCTGGGCACCGAGTTGGAGTTCACCGAGGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13809 ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  ATCGGCTTCGACAAGGGCTTCTTGTCGGCATACTTCGTTACCGACTTCGATAACCAGCAG
              310       320       330       340       350       360

              370       380       390       400       410       420
b13809 GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  GCGGTGCTCGAGGACGCGTTGATCCTGCTGCACCAAGACAAGATCAGCTCGCTTCCCGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b13809 CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  CTGTTGCCATTGCTGGAAAAGGTTGCAGGAACGGGTAAGCCACTACTGATCGTGGCTGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13809 GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7724  GACGTGGAGGGCGAAGCGTTGGCGACGCTGGTCGTCAACGCGATTCGCAAGACGTTGAAA
              490       500       510       520       530       540

              550  
b13809 GCGGTCGCGGTC
       ::::::::::::
b7724  GCGGTCGCGGTC
              550  

</pre>
<hr>
<p><pre>


552 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:47:11 2024 done: Mon Jul 22 02:47:13 2024
 Total Scan time:  2.250 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>