RECORD DETAILS
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b12769 |
| Chaperonin Group: | I |
| Deposit Date: | 2008-12-21 |
| Type: | ref |
| Type strain?: | yes |
| Genus: | [Bacteroides] |
| Species: | pectinophilus |
| Strain: | - |
| Lineage: | root; cellular organisms; Bacteria; Firmicutes; Clostridia; Clostridiales; unclassified Clostridiales; [Bacteroides] pectinophilus |
| Original ID: | ATCC 43243 |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | NZ_ABVQ01000035 |
| Peptide Genbank Accession: | ZP_03462070 |
| Best FASTA Match: | - |
| Date of FASTA search: | - |
| FASTA identity %: | - |
| Best BLASTP Match: | - |
| Date of BLASTP search: | - |
| BLASTP identity %: | - |
| Source: | Genbank |
| Notes: | Type strain synonyms ATCC 43243, N3. Both the cpn60 and 16S rRNA sequence from the whole genome suggest this organism is a Firmicute. |
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Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCAAAGGAAATTAAGTACGGAGCAGATGCCAGATCAGCAATGGAAGCAGGCGTTAAC AAGCTTGCCAATACAGTAAGGGTAACACTTGGACCTAAGGGTCGTAATGTAGTTCTTGAC AAGTCATATGGTGCACCGCTTATCACTAATGATGGTGTTACAATTGCCAAGGAGATAGAA CTCGAAGATAAGTTTGAGAATATGGGCGCACAGCTTGTTAAGGAAGTTGCAACAAAGACT AATGATGCAGCAGGTGATGGTACTACAACAGCAACAGTACTTGCACAGGCAATGGTTAAT GCCGGTATGAAGAACCTTGCAGCAGGTGCTAATCCAATCATCTTAAGAAAAGGCATGAAG AAGGCTACTGATTGTGCAGTTGAGGCTATTGCACATATGAGCGAGAAGGTTACAGGCAAG GATCAGATTGCAAAGGTTGCATCAATCTCAGCAGGTGACGAAGAAGTAGGCCAGATGGTA GCAGATGCAATGGAGAAGGTTTCTAACGATGGTGTTATCACAATCGAGGAATCTAAGACA ATGAAGACAGAGCTTGACCTTGTAGAAGGTATGCAGTTTGACAGAGGTTATATCTCAGCA TACATGGCAACAGATATGGATAAGATGGAAGCTGTCCTTGACAATCCATACATCCTTATC ACAGATAAGAAGATTTCTAACATTCAGGAGATTCTTCCAATACTTGAGCAGATTGTACAG AGTGGTTCAAAGCTCCTTATTATTGCAGAGGATGTCGAGGGCGAAGCTCTTACAACACTT ATTGTTAATAAGTTAAGAGGAACATTTAATGTTGTAGCTGTTAAGGCTCCGGGATATGGC GACAGAAGAAAAGAGATGCTTAAGGATATCGCCATTCTTACAGGTGGTCAGGTAGTCTCA GAAGAACTCGGACTTGAGCTTAAGGATACAACAATGGATATGCTCGGCAGAGCTAAGTCT GTTAAGGTTCAGAAAGAGAACACAGTTATCGTTGACGGTGAAGGCAACAAGGCTGATATC GATGCAAGAGTTGCACAGATTAAGGCTCAGATAGAAGAGACAACATCAGACTTTGATAAG GAAAAGCTTCAGGAAAGACTTGCAAAGCTTGCAGGCGGCGTAGCTGTTATCAGAGTAGGT GCTGCTACTGAGACAGAGATGAAGGAAGCTAAGCTTCGTATGGAAGATGCCCTTAATGCT ACAAGAGCAGCAGTTGAGGAAGGCGTTATCTCAGGTGGTGGTTCAGCATATATCCACGCA TCTAAGGAAGTTGCAAAGCTTGCTGCTTCACTTGCAGGAGATGAGAAGACAGGTGCTGAG ATTATTCTTAAGGCACTTGAAGCTCCACTGTTCCACATTGCTAACAATGCAGGACTTGAA GGCGCTGTTATTATCAACAACGTAAGAGAGTCTGAGGTTGGTACAGGATATGATGCTCTT AATGAGAAGTATGTGAACATGGTTGAGGCTGGTATCCTTGACCCTGCTAAGGTTACAAGA AGTGCTCTTCAGAATGCTACAAGTGTTGCATCTACACTTCTTACAACTGAAGCTGCTGTT GGAACAATCAAGGAAGACGCTCCGGCAATGCCAGCAGGTGCAGGCATGGGTGGAATGATG TAA |
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Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAKEIKYGADARSAMEAGVNKLANTVRVTLGPKGRNVVLDKSYGAPLITNDGVTIAKEIE LEDKFENMGAQLVKEVATKTNDAAGDGTTTATVLAQAMVNAGMKNLAAGANPIILRKGMK KATDCAVEAIAHMSEKVTGKDQIAKVASISAGDEEVGQMVADAMEKVSNDGVITIEESKT MKTELDLVEGMQFDRGYISAYMATDMDKMEAVLDNPYILITDKKISNIQEILPILEQIVQ SGSKLLIIAEDVEGEALTTLIVNKLRGTFNVVAVKAPGYGDRRKEMLKDIAILTGGQVVS EELGLELKDTTMDMLGRAKSVKVQKENTVIVDGEGNKADIDARVAQIKAQIEETTSDFDK EKLQERLAKLAGGVAVIRVGAATETEMKEAKLRMEDALNATRAAVEEGVISGGGSAYIHA SKEVAKLAASLAGDEKTGAEIILKALEAPLFHIANNAGLEGAVIINNVRESEVGTGYDAL NEKYVNMVEAGILDPAKVTRSALQNATSVASTLLTTEAAVGTIKEDAPAMPAGAGMGGMM |
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Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCAACAGTACTTGCACAGGCAATGGTTAATGCCGGTATGAAGAACCTTGCAGCAGGTGCT AATCCAATCATCTTAAGAAAAGGCATGAAGAAGGCTACTGATTGTGCAGTTGAGGCTATT GCACATATGAGCGAGAAGGTTACAGGCAAGGATCAGATTGCAAAGGTTGCATCAATCTCA GCAGGTGACGAAGAAGTAGGCCAGATGGTAGCAGATGCAATGGAGAAGGTTTCTAACGAT GGTGTTATCACAATCGAGGAATCTAAGACAATGAAGACAGAGCTTGACCTTGTAGAAGGT ATGCAGTTTGACAGAGGTTATATCTCAGCATACATGGCAACAGATATGGATAAGATGGAA GCTGTCCTTGACAATCCATACATCCTTATCACAGATAAGAAGATTTCTAACATTCAGGAG ATTCTTCCAATACTTGAGCAGATTGTACAGAGTGGTTCAAAGCTCCTTATTATTGCAGAG GATGTCGAGGGCGAAGCTCTTACAACACTTATTGTTAATAAGTTAAGAGGAACATTTAAT GTTGTAGCTGTT |
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Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQAMVNAGMKNLAAGANPIILRKGMKKATDCAVEAIAHMSEKVTGKDQIAKVASIS AGDEEVGQMVADAMEKVSNDGVITIEESKTMKTELDLVEGMQFDRGYISAYMATDMDKME AVLDNPYILITDKKISNIQEILPILEQIVQSGSKLLIIAEDVEGEALTTLIVNKLRGTFN VVAV |