/data/www/cpndb/fasta_results/b17969.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b17969 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b17969
<pre>
  1>>>b17969 546 nt - 546 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0843;  K=0.0003864 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  1.700
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b22819',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22819" target=_"blank">b22819</a> HE601807 Chlamydia trachomatis G/SotonG ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22819">align</A>
<a onClick="window.open('getRecord.php?id=b22810',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22810" target=_"blank">b22810</a> HE601800 Chlamydia trachomatis D/SotonD ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22810">align</A>
<a onClick="window.open('getRecord.php?id=b22727',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22727" target=_"blank">b22727</a> HE601810 Chlamydia trachomatis A/5291   ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22727">align</A>
<a onClick="window.open('getRecord.php?id=b19619',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19619" target=_"blank">b19619</a> CP002401 Chlamydia trachomatis A2497    ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b19619">align</A>
<a onClick="window.open('getRecord.php?id=b22822',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22822" target=_"blank">b22822</a> HE601808 Chlamydia trachomatis Ia/Soton ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22822">align</A>
<a onClick="window.open('getRecord.php?id=b1320',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1320" target=_"blank">b1320</a> NC_000117 Chlamydia trachomatis D/UW-3/C ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b1320">align</A>
<a onClick="window.open('getRecord.php?id=b17414',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17414" target=_"blank">b17414</a> CP002052 Chlamydia trachomatis D-EC     ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b17414">align</A>
<a onClick="window.open('getRecord.php?id=b22825',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22825" target=_"blank">b22825</a> HE601809 Chlamydia trachomatis Ia/Soton ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22825">align</A>
<a onClick="window.open('getRecord.php?id=b22807',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22807" target=_"blank">b22807</a> HE601799 Chlamydia trachomatis D/SotonD ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22807">align</A>
<a onClick="window.open('getRecord.php?id=b22720',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22720" target=_"blank">b22720</a> HE601796 Chlamydia trachomatis A/363    ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22720">align</A>
<a onClick="window.open('getRecord.php?id=b22724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22724" target=_"blank">b22724</a> HE601797 Chlamydia trachomatis A/7249   ( 546) [f] 2730 343.3 2.5e-94 <A HREF="#b22724">align</A>
<a onClick="window.open('getRecord.php?id=b7716',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7716" target=_"blank">b7716</a> CP000051 Chlamydia trachomatis A/HAR-13  ( 546) [f] 2721 342.2 5.4e-94 <A HREF="#b7716">align</A>
<a onClick="window.open('getRecord.php?id=b5018',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5018" target=_"blank">b5018</a> AY447003 Chlamydia trachomatis E/UW-5/CX ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b5018">align</A>
<a onClick="window.open('getRecord.php?id=b23921',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23921" target=_"blank">b23921</a> HF562300 Chlamydia trachomatis IU888    ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b23921">align</A>
<a onClick="window.open('getRecord.php?id=b20876',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20876" target=_"blank">b20876</a> HE601804 Chlamydia trachomatis F/SW4    ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b20876">align</A>
<a onClick="window.open('getRecord.php?id=b20873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20873" target=_"blank">b20873</a> HE601801 Chlamydia trachomatis E/SW3    ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b20873">align</A>
<a onClick="window.open('getRecord.php?id=b23924',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23924" target=_"blank">b23924</a> HF562298 Chlamydia trachomatis IU824    ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b23924">align</A>
<a onClick="window.open('getRecord.php?id=b22798',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22798" target=_"blank">b22798</a> HE601798 Chlamydia trachomatis D/SotonD ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b22798">align</A>
<a onClick="window.open('getRecord.php?id=b20879',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20879" target=_"blank">b20879</a> HE601805 Chlamydia trachomatis F/SW5    ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b20879">align</A>
<a onClick="window.open('getRecord.php?id=b22816',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22816" target=_"blank">b22816</a> HE601803 Chlamydia trachomatis E/SotonE ( 546) [f] 2712 341.1 1.1e-93 <A HREF="#b22816">align</A>
</pre><p><hr><p>

>>>b17969, 546 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b22819>
<pre>
>><a onClick="window.open('getRecord.php?id=b22819',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22819" target=_"blank">b22819</a> HE601807 Chlamydia trachomatis G/SotonG1         (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22819 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22819 GTAGTG
             

</pre>
<hr>
<A name=b22810>
<pre>
>><a onClick="window.open('getRecord.php?id=b22810',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22810" target=_"blank">b22810</a> HE601800 Chlamydia trachomatis D/SotonD6         (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22810 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22810 GTAGTG
             

</pre>
<hr>
<A name=b22727>
<pre>
>><a onClick="window.open('getRecord.php?id=b22727',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22727" target=_"blank">b22727</a> HE601810 Chlamydia trachomatis A/5291            (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22727 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22727 GTAGTG
             

</pre>
<hr>
<A name=b19619>
<pre>
>><a onClick="window.open('getRecord.php?id=b19619',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19619" target=_"blank">b19619</a> CP002401 Chlamydia trachomatis A2497             (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19619 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b19619 GTAGTG
             

</pre>
<hr>
<A name=b22822>
<pre>
>><a onClick="window.open('getRecord.php?id=b22822',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22822" target=_"blank">b22822</a> HE601808 Chlamydia trachomatis Ia/SotonIa1       (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22822 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22822 GTAGTG
             

</pre>
<hr>
<A name=b1320>
<pre>
>><a onClick="window.open('getRecord.php?id=b1320',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1320" target=_"blank">b1320</a> NC_000117 Chlamydia trachomatis D/UW-3/CX         (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1320  GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b1320  GTAGTG
             

</pre>
<hr>
<A name=b17414>
<pre>
>><a onClick="window.open('getRecord.php?id=b17414',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17414" target=_"blank">b17414</a> CP002052 Chlamydia trachomatis D-EC              (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17414 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b17414 GTAGTG
             

</pre>
<hr>
<A name=b22825>
<pre>
>><a onClick="window.open('getRecord.php?id=b22825',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22825" target=_"blank">b22825</a> HE601809 Chlamydia trachomatis Ia/SotonIa3       (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22825 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22825 GTAGTG
             

</pre>
<hr>
<A name=b22807>
<pre>
>><a onClick="window.open('getRecord.php?id=b22807',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22807" target=_"blank">b22807</a> HE601799 Chlamydia trachomatis D/SotonD5         (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22807 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22807 GTAGTG
             

</pre>
<hr>
<A name=b22720>
<pre>
>><a onClick="window.open('getRecord.php?id=b22720',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22720" target=_"blank">b22720</a> HE601796 Chlamydia trachomatis A/363             (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22720 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22720 GTAGTG
             

</pre>
<hr>
<A name=b22724>
<pre>
>><a onClick="window.open('getRecord.php?id=b22724',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22724" target=_"blank">b22724</a> HE601797 Chlamydia trachomatis A/7249            (546 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 1802.8  bits: 343.3 E(): 2.5e-94
banded Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22724 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22724 GTAGTG
             

</pre>
<hr>
<A name=b7716>
<pre>
>><a onClick="window.open('getRecord.php?id=b7716',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7716" target=_"blank">b7716</a> CP000051 Chlamydia trachomatis A/HAR-13           (546 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 1796.9  bits: 342.2 E(): 5.4e-94
banded Smith-Waterman score: 2721; 99.8% identity (99.8% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b7716  CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTACACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7716  GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b7716  GTAGTG
             

</pre>
<hr>
<A name=b5018>
<pre>
>><a onClick="window.open('getRecord.php?id=b5018',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5018" target=_"blank">b5018</a> AY447003 Chlamydia trachomatis E/UW-5/CX          (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b5018  TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b5018  CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5018  GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b5018  GTAGTG
             

</pre>
<hr>
<A name=b23921>
<pre>
>><a onClick="window.open('getRecord.php?id=b23921',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23921" target=_"blank">b23921</a> HF562300 Chlamydia trachomatis IU888             (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b23921 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23921 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23921 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b23921 GTAGTG
             

</pre>
<hr>
<A name=b20876>
<pre>
>><a onClick="window.open('getRecord.php?id=b20876',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20876" target=_"blank">b20876</a> HE601804 Chlamydia trachomatis F/SW4             (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b20876 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20876 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20876 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b20876 GTAGTG
             

</pre>
<hr>
<A name=b20873>
<pre>
>><a onClick="window.open('getRecord.php?id=b20873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20873" target=_"blank">b20873</a> HE601801 Chlamydia trachomatis E/SW3             (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b20873 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20873 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20873 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b20873 GTAGTG
             

</pre>
<hr>
<A name=b23924>
<pre>
>><a onClick="window.open('getRecord.php?id=b23924',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23924" target=_"blank">b23924</a> HF562298 Chlamydia trachomatis IU824             (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b23924 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b23924 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23924 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b23924 GTAGTG
             

</pre>
<hr>
<A name=b22798>
<pre>
>><a onClick="window.open('getRecord.php?id=b22798',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22798" target=_"blank">b22798</a> HE601798 Chlamydia trachomatis D/SotonD1         (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b22798 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b22798 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22798 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22798 GTAGTG
             

</pre>
<hr>
<A name=b20879>
<pre>
>><a onClick="window.open('getRecord.php?id=b20879',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20879" target=_"blank">b20879</a> HE601805 Chlamydia trachomatis F/SW5             (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b20879 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20879 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20879 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b20879 GTAGTG
             

</pre>
<hr>
<A name=b22816>
<pre>
>><a onClick="window.open('getRecord.php?id=b22816',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22816" target=_"blank">b22816</a> HE601803 Chlamydia trachomatis E/SotonE8         (546 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 1790.9  bits: 341.1 E(): 1.1e-93
banded Smith-Waterman score: 2712; 99.6% identity (99.6% similar) in 546 nt overlap (1-546:1-546)
<p>

               10        20        30        40        50        60
b17969 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 TCTGTTATTCTTTTACGAGCCTTTTTAAAGGCATCGATTCCTTTTATCGATCAAGGACTT
               10        20        30        40        50        60

               70        80        90       100       110       120
b17969 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAAGCGGTGTGCGCCTATCTG
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b22816 TCTCCTCGACTTTTAGCTTCTGCCCTCGCCTCTCAAAAAGAGGCGGTGTGCGCCTATCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b17969 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 CATTCGCACTCTTTTCTCTTAAAAGATGCTTCAAAAGTGCTCGGGCTCATTCGTTCCCAT
              130       140       150       160       170       180

              190       200       210       220       230       240
b17969 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 CTTCCTGATCCTCTTATTGGAGAGGCTTTTGCTGAAGCCGTTGCCTATACAGGACATGAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b17969 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 GGAGCTGTTGCTTTATCTCAAAGAAGCGGCTCTACGCTACACCTGGTGAAAGGAATACAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b17969 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 ACGCAAAAGGGCTATCGAGTGCCGTCATTTTTCCCTCATGACTCTTTTCATGAAAATCCT
              310       320       330       340       350       360

              370       380       390       400       410       420
b17969 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 ATTGTAGCTCCTAAAATTTTTGTCACAGATCAGAAAATCCATTGTCTTTTTCCTTTTCTG
              370       380       390       400       410       420

              430       440       450       460       470       480
b17969 CCCTTACTCAAGAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b22816 CCCTTACTCAAAAAATTCTCCGAAGAACAAACTCCTCTGATCATTTTTTGTAAGGAGATA
              430       440       450       460       470       480

              490       500       510       520       530       540
b17969 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22816 GCTCCCGACCCACTAGCTACCTGCATTGCAAACCGTATAGCGGGACTGTTGGATGTTCTA
              490       500       510       520       530       540

             
b17969 GTAGTG
       ::::::
b22816 GTAGTG
             

</pre>
<hr>
<p><pre>


546 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul  1 03:18:28 2024 done: Mon Jul  1 03:18:30 2024
 Total Scan time:  1.700 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>