/var/www/html/cpndb/fasta_results/b17965.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b17965 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b17965
<pre>
  1>>>b17965 561 nt - 561 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0334;  K=2.835e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 52, opt: 37, open/ext: -12/-4, width:  16
 Scan time:  2.630
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b22809',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22809" target=_"blank">b22809</a> HE601800 Chlamydia trachomatis D/SotonD ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22809">align</A>
<a onClick="window.open('getRecord.php?id=b19618',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19618" target=_"blank">b19618</a> CP002401 Chlamydia trachomatis A2497    ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b19618">align</A>
<a onClick="window.open('getRecord.php?id=b22821',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22821" target=_"blank">b22821</a> HE601808 Chlamydia trachomatis Ia/Soton ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22821">align</A>
<a onClick="window.open('getRecord.php?id=b22800',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22800" target=_"blank">b22800</a> HE601794 Chlamydia trachomatis K/SotonK ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22800">align</A>
<a onClick="window.open('getRecord.php?id=b17413',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17413" target=_"blank">b17413</a> CP002052 Chlamydia trachomatis D-EC     ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b17413">align</A>
<a onClick="window.open('getRecord.php?id=b22801',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22801" target=_"blank">b22801</a> HE601794 Chlamydia trachomatis K/SotonK ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22801">align</A>
<a onClick="window.open('getRecord.php?id=b1319',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1319" target=_"blank">b1319</a> NC_000117 Chlamydia trachomatis D/UW-3/C ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b1319">align</A>
<a onClick="window.open('getRecord.php?id=b22824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22824" target=_"blank">b22824</a> HE601809 Chlamydia trachomatis Ia/Soton ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22824">align</A>
<a onClick="window.open('getRecord.php?id=b22818',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22818" target=_"blank">b22818</a> HE601807 Chlamydia trachomatis G/SotonG ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22818">align</A>
<a onClick="window.open('getRecord.php?id=b7715',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7715" target=_"blank">b7715</a> CP000051 Chlamydia trachomatis A/HAR-13  ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b7715">align</A>
<a onClick="window.open('getRecord.php?id=b22806',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22806" target=_"blank">b22806</a> HE601799 Chlamydia trachomatis D/SotonD ( 561) [f] 2805 150.2 3.6e-36 <A HREF="#b22806">align</A>
<a onClick="window.open('getRecord.php?id=b22723',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22723" target=_"blank">b22723</a> HE601797 Chlamydia trachomatis A/7249   ( 558) [f] 2790 149.5   6e-36 <A HREF="#b22723">align</A>
<a onClick="window.open('getRecord.php?id=b22719',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22719" target=_"blank">b22719</a> HE601796 Chlamydia trachomatis A/363    ( 558) [f] 2790 149.5   6e-36 <A HREF="#b22719">align</A>
<a onClick="window.open('getRecord.php?id=b22726',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22726" target=_"blank">b22726</a> HE601810 Chlamydia trachomatis A/5291   ( 558) [f] 2790 149.5   6e-36 <A HREF="#b22726">align</A>
<a onClick="window.open('getRecord.php?id=b10737',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10737" target=_"blank">b10737</a> AM884176 Chlamydia trachomatis L2/434/B ( 562) [f] 2715 145.8 7.3e-35 <A HREF="#b10737">align</A>
<a onClick="window.open('getRecord.php?id=b22833',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22833" target=_"blank">b22833</a> HE601950 Chlamydia trachomatis L1/440/L ( 561) [f] 2715 145.8 7.3e-35 <A HREF="#b22833">align</A>
<a onClick="window.open('getRecord.php?id=b22836',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22836" target=_"blank">b22836</a> HE601951 Chlamydia trachomatis L1/1322/ ( 561) [f] 2715 145.8 7.3e-35 <A HREF="#b22836">align</A>
<a onClick="window.open('getRecord.php?id=b22839',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22839" target=_"blank">b22839</a> HE601965 Chlamydia trachomatis L2b/Ams5 ( 561) [f] 2715 145.8 7.3e-35 <A HREF="#b22839">align</A>
<a onClick="window.open('getRecord.php?id=b23923',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23923" target=_"blank">b23923</a> HF562298 Chlamydia trachomatis IU824    ( 561) [f] 2715 145.8 7.3e-35 <A HREF="#b23923">align</A>
<a onClick="window.open('getRecord.php?id=b22851',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22851" target=_"blank">b22851</a> HE601961 Chlamydia trachomatis L2b/Ams2 ( 561) [f] 2715 145.8 7.3e-35 <A HREF="#b22851">align</A>
</pre><p><hr><p>

>>>b17965, 561 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b22809>
<pre>
>><a onClick="window.open('getRecord.php?id=b22809',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22809" target=_"blank">b22809</a> HE601800 Chlamydia trachomatis D/SotonD6         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22809 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22809 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b19618>
<pre>
>><a onClick="window.open('getRecord.php?id=b19618',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19618" target=_"blank">b19618</a> CP002401 Chlamydia trachomatis A2497             (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19618 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b19618 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22821>
<pre>
>><a onClick="window.open('getRecord.php?id=b22821',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22821" target=_"blank">b22821</a> HE601808 Chlamydia trachomatis Ia/SotonIa1       (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22821 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22821 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22800>
<pre>
>><a onClick="window.open('getRecord.php?id=b22800',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22800" target=_"blank">b22800</a> HE601794 Chlamydia trachomatis K/SotonK1         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22800 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22800 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b17413>
<pre>
>><a onClick="window.open('getRecord.php?id=b17413',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17413" target=_"blank">b17413</a> CP002052 Chlamydia trachomatis D-EC              (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17413 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b17413 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22801>
<pre>
>><a onClick="window.open('getRecord.php?id=b22801',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22801" target=_"blank">b22801</a> HE601794 Chlamydia trachomatis K/SotonK1         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22801 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22801 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b1319>
<pre>
>><a onClick="window.open('getRecord.php?id=b1319',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1319" target=_"blank">b1319</a> NC_000117 Chlamydia trachomatis D/UW-3/CX         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1319  TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b1319  GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22824>
<pre>
>><a onClick="window.open('getRecord.php?id=b22824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22824" target=_"blank">b22824</a> HE601809 Chlamydia trachomatis Ia/SotonIa3       (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22824 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22824 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22818>
<pre>
>><a onClick="window.open('getRecord.php?id=b22818',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22818" target=_"blank">b22818</a> HE601807 Chlamydia trachomatis G/SotonG1         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22818 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22818 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b7715>
<pre>
>><a onClick="window.open('getRecord.php?id=b7715',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7715" target=_"blank">b7715</a> CP000051 Chlamydia trachomatis A/HAR-13           (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7715  TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b7715  GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22806>
<pre>
>><a onClick="window.open('getRecord.php?id=b22806',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22806" target=_"blank">b22806</a> HE601799 Chlamydia trachomatis D/SotonD5         (561 nt)
 initn: 2805 init1: 2805 opt: 2805  Z-score: 758.4  bits: 150.2 E(): 3.6e-36
banded Smith-Waterman score: 2805; 100.0% identity (100.0% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22806 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22806 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22723>
<pre>
>><a onClick="window.open('getRecord.php?id=b22723',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22723" target=_"blank">b22723</a> HE601797 Chlamydia trachomatis A/7249            (558 nt)
 initn: 2790 init1: 2790 opt: 2790  Z-score: 754.6  bits: 149.5 E(): 6e-36
banded Smith-Waterman score: 2790; 100.0% identity (100.0% similar) in 558 nt overlap (4-561:1-558)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723    GCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
                  10        20        30        40        50       

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
        60        70        80        90       100       110       

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       120       130       140       150       160       170       

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       180       190       200       210       220       230       

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       240       250       260       270       280       290       

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       300       310       320       330       340       350       

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       360       370       380       390       400       410       

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       420       430       440       450       460       470       

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22723 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       480       490       500       510       520       530       

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22723 GTTTTCCCTGTCTGTGCTGTG
       540       550        

</pre>
<hr>
<A name=b22719>
<pre>
>><a onClick="window.open('getRecord.php?id=b22719',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22719" target=_"blank">b22719</a> HE601796 Chlamydia trachomatis A/363             (558 nt)
 initn: 2790 init1: 2790 opt: 2790  Z-score: 754.6  bits: 149.5 E(): 6e-36
banded Smith-Waterman score: 2790; 100.0% identity (100.0% similar) in 558 nt overlap (4-561:1-558)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719    GCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
                  10        20        30        40        50       

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
        60        70        80        90       100       110       

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       120       130       140       150       160       170       

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       180       190       200       210       220       230       

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       240       250       260       270       280       290       

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       300       310       320       330       340       350       

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       360       370       380       390       400       410       

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       420       430       440       450       460       470       

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22719 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       480       490       500       510       520       530       

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22719 GTTTTCCCTGTCTGTGCTGTG
       540       550        

</pre>
<hr>
<A name=b22726>
<pre>
>><a onClick="window.open('getRecord.php?id=b22726',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22726" target=_"blank">b22726</a> HE601810 Chlamydia trachomatis A/5291            (558 nt)
 initn: 2790 init1: 2790 opt: 2790  Z-score: 754.6  bits: 149.5 E(): 6e-36
banded Smith-Waterman score: 2790; 100.0% identity (100.0% similar) in 558 nt overlap (4-561:1-558)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726    GCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
                  10        20        30        40        50       

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
        60        70        80        90       100       110       

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       120       130       140       150       160       170       

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       180       190       200       210       220       230       

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       240       250       260       270       280       290       

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       300       310       320       330       340       350       

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       360       370       380       390       400       410       

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       420       430       440       450       460       470       

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22726 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
       480       490       500       510       520       530       

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22726 GTTTTCCCTGTCTGTGCTGTG
       540       550        

</pre>
<hr>
<A name=b10737>
<pre>
>><a onClick="window.open('getRecord.php?id=b10737',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10737" target=_"blank">b10737</a> AM884176 Chlamydia trachomatis L2/434/Bu         (562 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:2-562)
<p>

                10        20        30        40        50         
b17965  ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTT
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10737 CACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTT
               10        20        30        40        50        60

      60        70        80        90       100       110         
b17965 GGATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTT
       ::::::::::::::::::::: :::::::::::::: :::::::::::::::::::::::
b10737 GGATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTT
               70        80        90       100       110       120

     120       130       140       150       160       170         
b17965 TTATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10737 TTATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGC
              130       140       150       160       170       180

     180       190       200       210       220       230         
b17965 GCGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAA
       :::::::: ::::::::::::::: :::::::::::::::::::::::::::::::::::
b10737 GCGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAA
              190       200       210       220       230       240

     240       250       260       270       280       290         
b17965 GAACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGA
       :::::::::::::::::::::::::::::::::   ::::::::::::::::::::::::
b10737 GAACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGA
              250       260       270       280       290       300

     300       310       320       330       340       350         
b17965 GCATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10737 GCATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGG
              310       320       330       340       350       360

     360       370       380       390       400       410         
b17965 AACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAA
       ::::::::::::::::::::::::::::::::: :::::::: :::::::::::::::::
b10737 AACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAA
              370       380       390       400       410       420

     420       430       440       450       460       470         
b17965 CCCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10737 CCCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGAT
              430       440       450       460       470       480

     480       490       500       510       520       530         
b17965 TTTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAG
       : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10737 TGTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAG
              490       500       510       520       530       540

     540       550       560 
b17965 GGTTTTCCCTGTCTGTGCTGTG
       ::::::::::::::::::::::
b10737 GGTTTTCCCTGTCTGTGCTGTG
              550       560  

</pre>
<hr>
<A name=b22833>
<pre>
>><a onClick="window.open('getRecord.php?id=b22833',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22833" target=_"blank">b22833</a> HE601950 Chlamydia trachomatis L1/440/LN         (561 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22833 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       :::::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b22833 GATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22833 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::: ::::::::::::::: ::::::::::::::::::::::::::::::::::::
b22833 CGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::   :::::::::::::::::::::::::
b22833 AACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22833 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       :::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b22833 ACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22833 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22833 GTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22833 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22836>
<pre>
>><a onClick="window.open('getRecord.php?id=b22836',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22836" target=_"blank">b22836</a> HE601951 Chlamydia trachomatis L1/1322/p2        (561 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22836 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       :::::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b22836 GATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22836 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::: ::::::::::::::: ::::::::::::::::::::::::::::::::::::
b22836 CGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::   :::::::::::::::::::::::::
b22836 AACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22836 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       :::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b22836 ACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22836 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22836 GTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22836 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22839>
<pre>
>><a onClick="window.open('getRecord.php?id=b22839',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22839" target=_"blank">b22839</a> HE601965 Chlamydia trachomatis L2b/Ams5          (561 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22839 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       :::::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b22839 GATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22839 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::: ::::::::::::::: ::::::::::::::::::::::::::::::::::::
b22839 CGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::   :::::::::::::::::::::::::
b22839 AACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22839 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       :::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b22839 ACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22839 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22839 GTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22839 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b23923>
<pre>
>><a onClick="window.open('getRecord.php?id=b23923',
                                'cpndb_record'); return false;" href="getRecord.php?id=b23923" target=_"blank">b23923</a> HF562298 Chlamydia trachomatis IU824             (561 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23923 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       :::::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b23923 GATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23923 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::: ::::::::::::::: ::::::::::::::::::::::::::::::::::::
b23923 CGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::   :::::::::::::::::::::::::
b23923 AACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23923 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       :::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b23923 ACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23923 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b23923 GTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b23923 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<A name=b22851>
<pre>
>><a onClick="window.open('getRecord.php?id=b22851',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22851" target=_"blank">b22851</a> HE601961 Chlamydia trachomatis L2b/Ams2          (561 nt)
 initn: 2715 init1: 2715 opt: 2715  Z-score: 735.0  bits: 145.8 E(): 7.3e-35
banded Smith-Waterman score: 2715; 98.2% identity (98.2% similar) in 561 nt overlap (1-561:1-561)
<p>

               10        20        30        40        50        60
b17965 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22851 ACAGCTTTACTAATAGAAGCGTTATTAGCGGAGGGCATGACAGGTATCCAGAAAGGTTTG
               10        20        30        40        50        60

               70        80        90       100       110       120
b17965 GATCCTCATGAAATCCATCGAGGAATGCTTCTTGCGGAAAAGAAAATCCAAGAGGTTTTT
       :::::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b22851 GATCCTCATGAAATCCATCGGGGAATGCTTCTTGCAGAAAAGAAAATCCAAGAGGTTTTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b17965 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22851 TATAGAGAAACATTTCCTCTAAGCGATCTGGAACATACAGTGTATGTATCCAGTATCGCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b17965 CGACGTTGTAATAGCGAAATCGCGTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
       ::::::: ::::::::::::::: ::::::::::::::::::::::::::::::::::::
b22851 CGACGTTTTAATAGCGAAATCGCTTCTGTTTTATCTAGCGCAGTGGGTTATGGAGGGAAG
              190       200       210       220       230       240

              250       260       270       280       290       300
b17965 AACGGTTACTATATCGTAGAAGAACATGAAGAGCATGAAACATACTGGCATGCCGAAGAG
       ::::::::::::::::::::::::::::::::   :::::::::::::::::::::::::
b22851 AACGGTTACTATATCGTAGAAGAACATGAAGAATCTGAAACATACTGGCATGCCGAAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b17965 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22851 CATGCTGTGTGGGATTTTGGATATGCTTCTCCTTACTTTATTACGCATGCGGAAACAGGA
              310       320       330       340       350       360

              370       380       390       400       410       420
b17965 ACGGTAGAATATAGCCAGGTTTATATTTTAGTTAGTGAACAGCCGCTGCATTATTCGAAC
       :::::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b22851 ACGGTAGAATATAGCCAGGTTTATATTTTAGTGAGTGAACATCCGCTGCATTATTCGAAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b17965 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22851 CCATCTTTTTTAACATTTCTTCAATCAGTTGTTCAGGCAGGGAAAACACCGCTTGTGATT
              430       440       450       460       470       480

              490       500       510       520       530       540
b17965 TTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22851 GTAGCAGAAGCTTTTGATAAAGAATTATTAGCTATGCTGGAAATGAATCAAATAGAGAGG
              490       500       510       520       530       540

              550       560 
b17965 GTTTTCCCTGTCTGTGCTGTG
       :::::::::::::::::::::
b22851 GTTTTCCCTGTCTGTGCTGTG
              550       560 

</pre>
<hr>
<p><pre>


561 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 04:35:05 2024 done: Mon Jul 22 04:35:08 2024
 Total Scan time:  2.630 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>