FASTA searches a protein or DNA sequence data bank version 35.03 Feb. 18, 2008 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448Query: /data/www/cpndb/fasta_results/b15770
1>>>b15770 555 nt - 555 nt Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences 10433008 residues in 18820 sequences Statistics: MLE_cen statistics: Lambda= 0.0174; K=1.394e-05 (cen=941) Algorithm: FASTA (3.5 Sept 2006) [optimized] Parameters: +5/-4 matrix (5:-4) ktup: 6 join: 51, opt: 36, open/ext: -12/-4, width: 16 Scan time: 2.680
The best scores are: opt bits E(18820) b1334 NC_002179 Chlamydophila pneumoniae AR39 ( 555) [f] 2757 85.2 1.3e-16 align b28491 AE001363 Chlamydophila pneumoniae CWL ( 555) [f] 2757 85.2 1.3e-16 align b4181 NC_005043 Chlamydophila pneumoniae TW-18 ( 555) [f] 2757 85.2 1.3e-16 align b1278 NC_002491 Chlamydophila pneumoniae J138 ( 549) [f] 2727 84.5 2.1e-16 align b1324 NC_000922 Chlamydophila pneumoniae CWL02 ( 545) [f] 2707 84.0 3e-16 align b27902 NC_022369 Lactococcus lactis subsp. c ( 552) [f] 410 26.4 65 align b17517 CP002094 Lactococcus lactis subsp. crem ( 552) [f] 410 26.4 65 align b21805 NC_019435 Lactococcus lactis subsp. cre ( 552) [f] 410 26.4 65 align b27776 ATBE01000351 Lactococcus lactis subsp. ( 552) [f] 410 26.4 65 align b27773 ATBA01000157 Lactococcus lactis subsp ( 552) [f] 410 26.4 65 align b1090 AY029215 Lactococcus lactis subsp. cremo ( 552) [f] 410 26.4 65 align b20086 CP003132 Lactococcus lactis subsp. crem ( 552) [f] 410 26.4 65 align b27777 ATBC01000278 Lactobacillus lactis sub ( 552) [f] 401 26.2 76 align b7507 CP000425 Lactococcus lactis subsp. cremo ( 552) [f] 401 26.2 76 align b27775 ASXF01000176 Lactococcus lactis subsp. ( 552) [f] 401 26.2 76 align b28276 NZ_CBLU010000005 Lactococcus lactis s ( 552) [f] 392 26.0 89 align b28417 CP006766 Lactococcus lactis subsp. la ( 552) [f] 392 26.0 89 align b434 X71132 Lactococcus lactis subsp. lactis i ( 552) [f] 392 26.0 89 align b27772 ATBD01000093 Lactococcus lactis subsp ( 552) [f] 392 26.0 89 align b1330 NC_002662 Lactococcus lactis subsp. lact ( 552) [f] 392 26.0 89 align
>>>b15770, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library
10 20 30 40 50 60
b15770 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
10 20 30 40 50 60
70 80 90 100 110 120
b15770 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
70 80 90 100 110 120
130 140 150 160 170 180
b15770 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
130 140 150 160 170 180
190 200 210 220 230 240
b15770 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
190 200 210 220 230 240
250 260 270 280 290 300
b15770 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAA
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b1334 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGACAAAACTTCCATGGATGTCTTTCAA
250 260 270 280 290 300
310 320 330 340 350 360
b15770 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
310 320 330 340 350 360
370 380 390 400 410 420
b15770 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
370 380 390 400 410 420
430 440 450 460 470 480
b15770 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1334 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
430 440 450 460 470 480
490 500 510 520 530 540
b15770 GAAGATATCGATCCAGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
b1334 GAAGATATCGATCCAGACGTACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
490 500 510 520 530 540
550
b15770 CAAGTAACTGTAGTC
:::::::::::::::
b1334 CAAGTAACTGTAGTC
550
10 20 30 40 50 60
b15770 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
10 20 30 40 50 60
70 80 90 100 110 120
b15770 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
70 80 90 100 110 120
130 140 150 160 170 180
b15770 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
130 140 150 160 170 180
190 200 210 220 230 240
b15770 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
190 200 210 220 230 240
250 260 270 280 290 300
b15770 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAA
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b28491 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGACAAAACTTCCATGGATGTCTTTCAA
250 260 270 280 290 300
310 320 330 340 350 360
b15770 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
310 320 330 340 350 360
370 380 390 400 410 420
b15770 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
370 380 390 400 410 420
430 440 450 460 470 480
b15770 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28491 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
430 440 450 460 470 480
490 500 510 520 530 540
b15770 GAAGATATCGATCCAGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
b28491 GAAGATATCGATCCAGACGTACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
490 500 510 520 530 540
550
b15770 CAAGTAACTGTAGTC
:::::::::::::::
b28491 CAAGTAACTGTAGTC
550
10 20 30 40 50 60
b15770 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
10 20 30 40 50 60
70 80 90 100 110 120
b15770 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
70 80 90 100 110 120
130 140 150 160 170 180
b15770 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
130 140 150 160 170 180
190 200 210 220 230 240
b15770 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
190 200 210 220 230 240
250 260 270 280 290 300
b15770 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAA
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b4181 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGACAAAACTTCCATGGATGTCTTTCAA
250 260 270 280 290 300
310 320 330 340 350 360
b15770 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
310 320 330 340 350 360
370 380 390 400 410 420
b15770 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
370 380 390 400 410 420
430 440 450 460 470 480
b15770 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4181 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
430 440 450 460 470 480
490 500 510 520 530 540
b15770 GAAGATATCGATCCAGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
b4181 GAAGATATCGATCCAGACGTACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
490 500 510 520 530 540
550
b15770 CAAGTAACTGTAGTC
:::::::::::::::
b4181 CAAGTAACTGTAGTC
550
10 20 30 40 50 60
b15770 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 ATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
10 20 30 40 50
70 80 90 100 110 120
b15770 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
60 70 80 90 100 110
130 140 150 160 170 180
b15770 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
120 130 140 150 160 170
190 200 210 220 230 240
b15770 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
180 190 200 210 220 230
250 260 270 280 290 300
b15770 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAA
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b1278 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGACAAAACTTCCATGGATGTCTTTCAA
240 250 260 270 280 290
310 320 330 340 350 360
b15770 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
300 310 320 330 340 350
370 380 390 400 410 420
b15770 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
360 370 380 390 400 410
430 440 450 460 470 480
b15770 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1278 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
420 430 440 450 460 470
490 500 510 520 530 540
b15770 GAAGATATCGATCCAGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
b1278 GAAGATATCGATCCAGACGTACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
480 490 500 510 520 530
550
b15770 CAAGTAACTGTAGTC
:::::::::::::::
b1278 CAAGTAACTGTAGTC
540
10 20 30 40 50 60
b15770 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 GGACTTATTTTACTCCATGCAATTTTACAGGAAAGCTATGCAGCTTTAGAAAAGGGAATC
10 20 30 40 50 60
70 80 90 100 110 120
b15770 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 TCCACACACAAGCTCATTGCCTCTTTAAAATTGCAGGGAGAAAAGCTTCAGGAAGCCTTA
70 80 90 100 110 120
130 140 150 160 170 180
b15770 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 CAACAACAATCTTGGCCTATTAAAGATGCTCTAAAAGTTCGCAATATTATTTTTTCTTCT
130 140 150 160 170 180
190 200 210 220 230 240
b15770 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 CTACACATGCCCACCATTGCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAG
190 200 210 220 230 240
250 260 270 280 290 300
b15770 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAA
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b1324 GGTCTTATCTCCATCACTAAGGAGAGAGAAAACGACAAAACTTCCATGGATGTCTTTCAA
250 260 270 280 290 300
310 320 330 340 350 360
b15770 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 GGATTTAAAATTCCTGCAGGGTATGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGT
310 320 330 340 350 360
370 380 390 400 410 420
b15770 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 CTAACTAGAATTGCTCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCAC
370 380 390 400 410 420
430 440 450 460 470 480
b15770 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1324 TCCTTACTTCCCCTACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGT
430 440 450 460 470 480
490 500 510 520 530 540
b15770 GAAGATATCGATCCAGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
b1324 GAAGATATCGATCCAGACGTACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTG
490 500 510 520 530 540
550
b15770 CAAGTAACTGTAGTC
:::::
b1324 CAAGT
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b27902 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b27902 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b27902 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b27902 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b27902 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b27902 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b27902 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b17517 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b17517 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b17517 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b17517 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b17517 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b17517 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b17517 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b21805 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b21805 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b21805 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b21805 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b21805 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b21805 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b21805 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b27776 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b27776 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b27776 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b27776 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b27776 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b27776 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b27776 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b27773 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b27773 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b27773 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b27773 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b27773 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b27773 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b27773 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b1090 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b1090 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b1090 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b1090 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b1090 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b1090 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b1090 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b20086 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b20086 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b20086 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b20086 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b20086 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b20086 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b20086 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b27777 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b27777 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : :: : :
b27777 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b27777 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b27777 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b27777 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b27777 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b7507 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b7507 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : : :: : :
b7507 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAGAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b7507 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b7507 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : :::: :::: : :::
b7507 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGAGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b7507 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: : :::
b27775 GGGGAATATATTTCTGACGCAATGGAGCGTGTAGGTTCTGACGGAGTTATCACAATC---
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGA--GAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTG
: ::: :::: :: : :::: : ::::: :: ::::: : :: ::
b27775 --GAAGAATCAAAAGGAATGCAAACAGAGCTTGATGTTGTTGAAGGAATGCAATTTGACC
260 270 280 290 300 310
320 330 340 350 360 370
b15770 CAGGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGC
:: :: :: :: : ::: : :::::: :::::: : :: : :
b27775 GTGGATACTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAGTTAGA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 TCATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCT
: ::::: :::::::: :: :::: ::: ::::: : ::::: : : :: ::
b27775 TAATCCTTATATTCTGATTACGGATAAAAAAATCTCAAATATTCAAGAAATTTTACCGCT
380 390 400 410 420 430
440 450 460 470 480 490
b15770 ACTCCAAGAAATTTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCC
:: :: :::::: :: ::: : : :: : ::: : ::: ::: : :::
b27775 TCTTGAACAAATTTTGAAAACAAATCGTCCACTTTTAATTGTTGCTGATGATGTTGATGG
440 450 460 470 480 490
500 510 520 530 540 550
b15770 AGACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAAGTAACTGTAGT
::: ::: : : :: :::::: :::: :: : ::::: :::: : :::
b27775 AGAAGCATTGCCAACTCTTGTTCTTAATAAGATTAAAGGGGTCTTCAACGTAGTCGCTGT
500 510 520 530 540 550
b15770 C
b27775 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: :::: :
b28276 GGTGAGTATATTTCTGATGCAATGGAACGTGTAGGTTCTGACGGAGTTATCACCAT---T
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTGCA
: :: : :: : ::::: : ::::: :: ::::: : :: ::
b28276 GAAGAATCAAAAGGGATGCAAACTGAACTCGATGTTGTTGAAGGAATGCAATTTGACCGT
260 270 280 290 300 310
320 330 340 350 360 370
b15770 GGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGCTC
:: :: :: :: : ::: : :::::: :::::: : :: : : : :
b28276 GGATATTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAATTAGATA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 ATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCTAC
::::: ::::: :: :: :: : ::: ::::: : ::::: : : :: :: :
b28276 ATCCTTATATTCTTATTACCGACAAAAAAATCTCAAACATTCAAGAAATTTTACCGCTCC
380 390 400 410 420 430
440 450 460 470 480 490
b15770 TCCAAGAAAT-TTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCCA
: :: :::: :: : :::::: : ::: :: : ::: : ::: ::: : ::: :
b28276 TTGAACAAATCTTGAAAACAAATCGTCCACTTC-TTATTGTAGCTGATGATGTTGATGGA
440 450 460 470 480 490
500 510 520 530 540 550
b15770 GACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAA----GTAACTGT
:: ::: : : :: :::::: :::: :: : :::: :::: ::: ::: ::::
b28276 GAAGCATTGCCAACGCTTGTTCTTAATAAGATTAAAGGTGTCTT-CAATGTTGTAGCTGT
500 510 520 530 540 550
b15770 AGTC
:
b28276 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: :::: :
b28417 GGTGAGTATATTTCTGATGCAATGGAACGTGTAGGTTCTGACGGAGTTATCACCAT---T
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTGCA
: :: : :: : ::::: : ::::: :: ::::: : :: ::
b28417 GAAGAATCAAAAGGGATGCAAACTGAACTCGATGTTGTTGAAGGAATGCAATTTGACCGT
260 270 280 290 300 310
320 330 340 350 360 370
b15770 GGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGCTC
:: :: :: :: : ::: : :::::: :::::: : :: : : : :
b28417 GGATATTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAATTAGATA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 ATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCTAC
::::: ::::: :: :: :: : ::: ::::: : ::::: : : :: :: :
b28417 ATCCTTATATTCTTATTACCGACAAAAAAATCTCAAACATTCAAGAAATTTTACCGCTCC
380 390 400 410 420 430
440 450 460 470 480 490
b15770 TCCAAGAAAT-TTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCCA
: :: :::: :: : :::::: : ::: :: : ::: : ::: ::: : ::: :
b28417 TTGAACAAATCTTGAAAACAAATCGTCCACTTC-TTATTGTAGCTGATGATGTTGATGGA
440 450 460 470 480 490
500 510 520 530 540 550
b15770 GACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAA----GTAACTGT
:: ::: : : :: :::::: :::: :: : :::: :::: ::: ::: ::::
b28417 GAAGCATTGCCAACGCTTGTTCTTAATAAGATTAAAGGTGTCTT-CAATGTTGTAGCTGT
500 510 520 530 540 550
b15770 AGTC
:
b28417 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: :::: :
b434 GGTGAGTATATTTCTGATGCAATGGAACGTGTAGGTTCTGACGGAGTTATCACCAT---T
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTGCA
: :: : :: : ::::: : ::::: :: ::::: : :: ::
b434 GAAGAATCAAAAGGGATGCAAACTGAACTCGATGTTGTTGAAGGAATGCAATTTGACCGT
260 270 280 290 300 310
320 330 340 350 360 370
b15770 GGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGCTC
:: :: :: :: : ::: : :::::: :::::: : :: : : : :
b434 GGATATTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAATTAGATA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 ATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCTAC
::::: ::::: :: :: :: : ::: ::::: : ::::: : : :: :: :
b434 ATCCTTATATTCTTATTACCGACAAAAAAATCTCAAACATTCAAGAAATTTTACCGCTCC
380 390 400 410 420 430
440 450 460 470 480 490
b15770 TCCAAGAAAT-TTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCCA
: :: :::: :: : :::::: : ::: :: : ::: : ::: ::: : ::: :
b434 TTGAACAAATCTTGAAAACAAATCGTCCACTTC-TTATTGTAGCTGATGATGTTGATGGA
440 450 460 470 480 490
500 510 520 530 540 550
b15770 GACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAA----GTAACTGT
:: ::: : : :: :::::: :::: :: : :::: :::: ::: ::: ::::
b434 GAAGCATTGCCAACGCTTGTTCTTAATAAGATTAAAGGTGTCTT-CAATGTTGTAGCTGT
500 510 520 530 540 550
b15770 AGTC
:
b434 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: :::: :
b27772 GGTGAGTATATTTCTGATGCAATGGAACGTGTAGGTTCTGACGGAGTTATCACCAT---T
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTGCA
: :: : :: : ::::: : ::::: :: ::::: : :: ::
b27772 GAAGAATCAAAAGGGATGCAAACTGAACTCGATGTTGTTGAAGGAATGCAATTTGACCGT
260 270 280 290 300 310
320 330 340 350 360 370
b15770 GGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGCTC
:: :: :: :: : ::: : :::::: :::::: : :: : : : :
b27772 GGATATTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAATTAGATA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 ATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCTAC
::::: ::::: :: :: :: : ::: ::::: : ::::: : : :: :: :
b27772 ATCCTTATATTCTTATTACCGACAAAAAAATCTCAAACATTCAAGAAATTTTACCGCTCC
380 390 400 410 420 430
440 450 460 470 480 490
b15770 TCCAAGAAAT-TTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCCA
: :: :::: :: : :::::: : ::: :: : ::: : ::: ::: : ::: :
b27772 TTGAACAAATCTTGAAAACAAATCGTCCACTTC-TTATTGTAGCTGATGATGTTGATGGA
440 450 460 470 480 490
500 510 520 530 540 550
b15770 GACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAA----GTAACTGT
:: ::: : : :: :::::: :::: :: : :::: :::: ::: ::: ::::
b27772 GAAGCATTGCCAACGCTTGTTCTTAATAAGATTAAAGGTGTCTT-CAATGTTGTAGCTGT
500 510 520 530 540 550
b15770 AGTC
:
b27772 A
200 210 220 230 240 250
b15770 GCCGATCATTTTTACAATGCTTTTTCTGTGGTAGGCCCTGAGGGTCTTATCTCCATCACT
::::: :::: :: ::::: :::: :
b1330 GGTGAGTATATTTCTGATGCAATGGAACGTGTAGGTTCTGACGGAGTTATCACCAT---T
200 210 220 230 240 250
260 270 280 290 300 310
b15770 AAGGAGAGAGAAAACGAGAAAACTTCCATGGATGTCTTTCAAGGATTTAAAATTCCTGCA
: :: : :: : ::::: : ::::: :: ::::: : :: ::
b1330 GAAGAATCAAAAGGGATGCAAACTGAACTCGATGTTGTTGAAGGAATGCAATTTGACCGT
260 270 280 290 300 310
320 330 340 350 360 370
b15770 GGGTA--TGCTTCGACGTATTTTGTTTCTGATACAGCGTCTCGTCTAACTAGAATTGCTC
:: :: :: :: : ::: : :::::: :::::: : :: : : : :
b1330 GGATATTTGAGTCAA--TATATGGTTTCTAATACAGAAAAAATGGTTGCTGAATTAGATA
320 330 340 350 360 370
380 390 400 410 420 430
b15770 ATCCTCTAATTCTGATCACAGATAGAAAGATCTCTATGATTCACTCCTTACTTCCCCTAC
::::: ::::: :: :: :: : ::: ::::: : ::::: : : :: :: :
b1330 ATCCTTATATTCTTATTACCGACAAAAAAATCTCAAACATTCAAGAAATTTTACCGCTCC
380 390 400 410 420 430
440 450 460 470 480 490
b15770 TCCAAGAAAT-TTCAGAACAAAACCAGCACCTCATCATTTTCTGTGAAGATATCGATCCA
: :: :::: :: : :::::: : ::: :: : ::: : ::: ::: : ::: :
b1330 TTGAACAAATCTTGAAAACAAATCGTCCACTTC-TTATTGTAGCTGATGATGTTGATGGA
440 450 460 470 480 490
500 510 520 530 540 550
b15770 GACGCACTTGCTACCCTTGTTGTTAACAAATTGCAAGGGCTCTTGCAA----GTAACTGT
:: ::: : : :: :::::: :::: :: : :::: :::: ::: ::: ::::
b1330 GAAGCATTGCCAACGCTTGTTCTTAATAAGATTAAAGGTGTCTT-CAATGTTGTAGCTGT
500 510 520 530 540 550
b15770 AGTC
:
b1330 A
>>b1334 NC_002179 Chlamydophila pneumoniae AR39 (555 nt)
initn: 2757 init1: 2757 opt: 2757 Z-score: 407.7 bits: 85.2 E(): 1.3e-16
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
>>b28491 AE001363 Chlamydophila pneumoniae CWL029 (555 nt)
initn: 2757 init1: 2757 opt: 2757 Z-score: 407.7 bits: 85.2 E(): 1.3e-16
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
>>b4181 NC_005043 Chlamydophila pneumoniae TW-183 ATCC V (555 nt)
initn: 2757 init1: 2757 opt: 2757 Z-score: 407.7 bits: 85.2 E(): 1.3e-16
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
>>b1278 NC_002491 Chlamydophila pneumoniae J138 (549 nt)
initn: 2727 init1: 2727 opt: 2727 Z-score: 403.7 bits: 84.5 E(): 2.1e-16
banded Smith-Waterman score: 2727; 99.6% identity (99.6% similar) in 549 nt overlap (7-555:1-549)
>>b1324 NC_000922 Chlamydophila pneumoniae CWL029 (545 nt)
initn: 2707 init1: 2707 opt: 2707 Z-score: 401.0 bits: 84.0 E(): 3e-16
banded Smith-Waterman score: 2707; 99.6% identity (99.6% similar) in 545 nt overlap (1-545:1-545)
>>b27902 NC_022369 Lactococcus lactis subsp. cremoris (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b17517 CP002094 Lactococcus lactis subsp. cremoris NZ9 (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b21805 NC_019435 Lactococcus lactis subsp. cremoris UC (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b27776 ATBE01000351 Lactococcus lactis subsp. cremori (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b27773 ATBA01000157 Lactococcus lactis subsp. cremor (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b1090 AY029215 Lactococcus lactis subsp. cremoris stra (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b20086 CP003132 Lactococcus lactis subsp. cremoris A76 (552 nt)
initn: 264 init1: 264 opt: 410 Z-score: 89.7 bits: 26.4 E(): 65
banded Smith-Waterman score: 410; 60.2% identity (60.2% similar) in 322 nt overlap (229-546:229-543)
>>b27777 ATBC01000278 Lactobacillus lactis subsp. crem (552 nt)
initn: 255 init1: 255 opt: 401 Z-score: 88.5 bits: 26.2 E(): 76
banded Smith-Waterman score: 401; 59.9% identity (59.9% similar) in 322 nt overlap (229-546:229-543)
>>b7507 CP000425 Lactococcus lactis subsp. cremoris SK11 (552 nt)
initn: 264 init1: 264 opt: 401 Z-score: 88.5 bits: 26.2 E(): 76
banded Smith-Waterman score: 401; 59.9% identity (59.9% similar) in 322 nt overlap (229-546:229-543)
>>b27775 ASXF01000176 Lactococcus lactis subsp. cremori (552 nt)
initn: 255 init1: 255 opt: 401 Z-score: 88.5 bits: 26.2 E(): 76
banded Smith-Waterman score: 401; 59.9% identity (59.9% similar) in 322 nt overlap (229-546:229-543)
>>b28276 NZ_CBLU010000005 Lactococcus lactis subsp. la (552 nt)
initn: 56 init1: 56 opt: 392 Z-score: 87.3 bits: 26.0 E(): 89
banded Smith-Waterman score: 392; 60.4% identity (60.4% similar) in 331 nt overlap (229-552:229-552)
>>b28417 CP006766 Lactococcus lactis subsp. lactis KLD (552 nt)
initn: 56 init1: 56 opt: 392 Z-score: 87.3 bits: 26.0 E(): 89
banded Smith-Waterman score: 392; 60.4% identity (60.4% similar) in 331 nt overlap (229-552:229-552)
>>b434 X71132 Lactococcus lactis subsp. lactis isolate C (552 nt)
initn: 56 init1: 56 opt: 392 Z-score: 87.3 bits: 26.0 E(): 89
banded Smith-Waterman score: 392; 60.4% identity (60.4% similar) in 331 nt overlap (229-552:229-552)
>>b27772 ATBD01000093 Lactococcus lactis subsp. lactis (552 nt)
initn: 56 init1: 56 opt: 392 Z-score: 87.3 bits: 26.0 E(): 89
banded Smith-Waterman score: 392; 60.4% identity (60.4% similar) in 331 nt overlap (229-552:229-552)
>>b1330 NC_002662 Lactococcus lactis subsp. lactis IL140 (552 nt)
initn: 56 init1: 56 opt: 392 Z-score: 87.3 bits: 26.0 E(): 89
banded Smith-Waterman score: 392; 60.4% identity (60.4% similar) in 331 nt overlap (229-552:229-552)
555 residues in 1 query sequences
10433008 residues in 18820 library sequences
Scomplib [35.03]
start: Mon Jul 22 03:22:12 2024 done: Mon Jul 22 03:22:14 2024
Total Scan time: 2.680 Total Display time: 0.010
Function used was FASTA [version 35.03 Feb. 18, 2008]