/var/www/html/cpndb/fasta_results/b15768.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b15768 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b15768
<pre>
  1>>>b15768 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0030;  K=1.6e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.320
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b28373',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28373" target=_"blank">b28373</a> AZNB01000080 Chlamydia  pneumoniae  B21 ( 555) [f] 2775 27.9      23 <A HREF="#b28373">align</A>
<a onClick="window.open('getRecord.php?id=b1333',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1333" target=_"blank">b1333</a> NC_002179 Chlamydophila pneumoniae AR39  ( 555) [f] 2766 27.8      24 <A HREF="#b1333">align</A>
<a onClick="window.open('getRecord.php?id=b28489',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28489" target=_"blank">b28489</a> AE001363 Chlamydophila  pneumoniae  CWL ( 555) [f] 2766 27.8      24 <A HREF="#b28489">align</A>
<a onClick="window.open('getRecord.php?id=b1322',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1322" target=_"blank">b1322</a> NC_000922 Chlamydophila pneumoniae CWL02 ( 555) [f] 2766 27.8      24 <A HREF="#b1322">align</A>
<a onClick="window.open('getRecord.php?id=b5003',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5003" target=_"blank">b5003</a> M69217 Chlamydophila pneumoniae TWAR     ( 555) [f] 2766 27.8      24 <A HREF="#b5003">align</A>
<a onClick="window.open('getRecord.php?id=b1276',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1276" target=_"blank">b1276</a> NC_002491 Chlamydophila pneumoniae J138  ( 555) [f] 2766 27.8      24 <A HREF="#b1276">align</A>
<a onClick="window.open('getRecord.php?id=b4183',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4183" target=_"blank">b4183</a> NC_005043 Chlamydophila pneumoniae TW-18 ( 555) [f] 2766 27.8      24 <A HREF="#b4183">align</A>
<a onClick="window.open('getRecord.php?id=b4031',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4031" target=_"blank">b4031</a> NC_003361 Chlamydophila caviae GPIC ATCC ( 555) [f] 2122 25.1 1.6e+02 <A HREF="#b4031">align</A>
<a onClick="window.open('getRecord.php?id=b21022',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21022" target=_"blank">b21022</a> CP003798 Chlamydia psittaci NJ1         ( 555) [f] 2086 24.9 1.8e+02 <A HREF="#b21022">align</A>
<a onClick="window.open('getRecord.php?id=b21031',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21031" target=_"blank">b21031</a> CP003795 Chlamydia psittaci M56         ( 555) [f] 2068 24.8 1.9e+02 <A HREF="#b21031">align</A>
<a onClick="window.open('getRecord.php?id=b21028',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21028" target=_"blank">b21028</a> CP003796 Chlamydia psittaci WC          ( 555) [f] 2059 24.8   2e+02 <A HREF="#b21028">align</A>
<a onClick="window.open('getRecord.php?id=b302',
                                'cpndb_record'); return false;" href="getRecord.php?id=b302" target=_"blank">b302</a> AF109790 Chlamydophila abortus B577 ATCC  ( 555) [f] 2050 24.8   2e+02 <A HREF="#b302">align</A>
<a onClick="window.open('getRecord.php?id=v4961',
                                'cpndb_record'); return false;" href="getRecord.php?id=v4961" target=_"blank">v4961</a> j0521 Chlamydophila abortus EP12         ( 555) [f] 2050 24.8   2e+02 <A HREF="#v4961">align</A>
<a onClick="window.open('getRecord.php?id=b19087',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19087" target=_"blank">b19087</a> CP002804 Chlamydophila psittaci C19/98  ( 555) [f] 2050 24.8   2e+02 <A HREF="#b19087">align</A>
<a onClick="window.open('getRecord.php?id=b5067',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5067" target=_"blank">b5067</a> CR848038 Chlamydophila abortus S26/3     ( 555) [f] 2050 24.8   2e+02 <A HREF="#b5067">align</A>
<a onClick="window.open('getRecord.php?id=b21034',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21034" target=_"blank">b21034</a> CP003794 Chlamydia psittaci WS/RT/E30   ( 555) [f] 2050 24.8   2e+02 <A HREF="#b21034">align</A>
<a onClick="window.open('getRecord.php?id=b7500',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7500" target=_"blank">b7500</a> AY581777 Chlamydophila psittaci 6BC ATCC ( 555) [f] 2050 24.8   2e+02 <A HREF="#b7500">align</A>
<a onClick="window.open('getRecord.php?id=b18654',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18654" target=_"blank">b18654</a> CP002549 Chlamydophila psittaci 6BC     ( 555) [f] 2050 24.8   2e+02 <A HREF="#b18654">align</A>
<a onClick="window.open('getRecord.php?id=b21037',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21037" target=_"blank">b21037</a> CP003793 Chlamydia psittaci VS225       ( 555) [f] 2050 24.8   2e+02 <A HREF="#b21037">align</A>
<a onClick="window.open('getRecord.php?id=b19084',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19084" target=_"blank">b19084</a> CP002805 Chlamydophila psittaci 01DC11  ( 555) [f] 2050 24.8   2e+02 <A HREF="#b19084">align</A>
</pre><p><hr><p>

>>>b15768, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b28373>
<pre>
>><a onClick="window.open('getRecord.php?id=b28373',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28373" target=_"blank">b28373</a> AZNB01000080 Chlamydia  pneumoniae  B21          (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.6  bits: 27.9 E():   23
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28373 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b28373 AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b1333>
<pre>
>><a onClick="window.open('getRecord.php?id=b1333',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1333" target=_"blank">b1333</a> NC_002179 Chlamydophila pneumoniae AR39           (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b1333  GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1333  GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b1333  AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b28489>
<pre>
>><a onClick="window.open('getRecord.php?id=b28489',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28489" target=_"blank">b28489</a> AE001363 Chlamydophila  pneumoniae  CWL029       (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b28489 GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b28489 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b28489 AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b1322>
<pre>
>><a onClick="window.open('getRecord.php?id=b1322',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1322" target=_"blank">b1322</a> NC_000922 Chlamydophila pneumoniae CWL029         (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b1322  GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1322  GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b1322  AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b5003>
<pre>
>><a onClick="window.open('getRecord.php?id=b5003',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5003" target=_"blank">b5003</a> M69217 Chlamydophila pneumoniae TWAR              (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b5003  GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5003  GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b5003  AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b1276>
<pre>
>><a onClick="window.open('getRecord.php?id=b1276',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1276" target=_"blank">b1276</a> NC_002491 Chlamydophila pneumoniae J138           (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b1276  GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1276  GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b1276  AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b4183>
<pre>
>><a onClick="window.open('getRecord.php?id=b4183',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4183" target=_"blank">b4183</a> NC_005043 Chlamydophila pneumoniae TW-183 ATCC V  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 97.4  bits: 27.8 E():   24
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b4183  GCAACTGTTCTTGCAGAAGCAATCTATAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4183  GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::::::::::
b4183  AGAGTCTGTGCAGTG
              550     

</pre>
<hr>
<A name=b4031>
<pre>
>><a onClick="window.open('getRecord.php?id=b4031',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4031" target=_"blank">b4031</a> NC_003361 Chlamydophila caviae GPIC ATCC VR-813   (555 nt)
 initn: 2116 init1: 2116 opt: 2122  Z-score: 82.4  bits: 25.1 E(): 1.6e+02
banded Smith-Waterman score: 2122; 87.0% identity (87.0% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::::::::: :::::::: :::::  : ::::: :: ::::: :: :::
b4031  GCTACTGTTCTTGCAGAAGCTATCTACAGTGAAGGATTGAGAAACGTAACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :::::::: :: :: :: :: :::::::: ::::: :::::: ::
b4031  AATCCTATGGACCTCAAAAGAGGCATTGATAAGGCAGTAAAAGTCGTTGTCGATGAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::: :::::::::::::::::::: ::::::::::: ::::: :: 
b4031  AAAAAAATTAGTAAACCCGTACAACATCACAAAGAAATAGCTCAAGTAGCGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :::::::::::: : :::::::: :::::::: :: ::::: :::::::::::::: :::
b4031  GCAAATAATGATGCTGAAATCGGTAATCTTATCGCCGAAGCCATGGAAAAAGTTGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::: :: ::::::::::::::::::::::: ::::::::::: ::::::::::: :::
b4031  AACGGCTCTATTACTGTTGAAGAAGCTAAAGGTTTCGAAACTGTCCTCGACGTTGTCGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :::::::::::::: :::::::: ::::: :::
b4031  GGTATGAATTTCAACCGCGGATACCTATCCAGCTACTTCTCTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: ::::::::::: :::::  : :: ::::: ::::::::::: :: ::::: :::
b4031  GAATGTGTTTTAGAAGAAGCTCTCGTGCTTATCTATGATAAAAAAATTTCCGGAATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :: :: :::::::::::::::::::::::::: ::::: :: ::  : :::::::: 
b4031  GATTTTCTACCAGTTTTACAACAAGTAGCAGAATCAGGACGTCCCCTACTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::::::::::::::: ::: ::::::: :: ::::: ::::: ::::::
b4031  GAAGATATCGAAGGAGAAGCTTTAGCTACTTTAGTAGTAAACAGACTACGTGCTGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       ::::: :::::::: 
b4031  AGAGTGTGTGCAGTA
              550     

</pre>
<hr>
<A name=b21022>
<pre>
>><a onClick="window.open('getRecord.php?id=b21022',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21022" target=_"blank">b21022</a> CP003798 Chlamydia psittaci NJ1                  (555 nt)
 initn: 2059 init1: 2059 opt: 2086  Z-score: 81.6  bits: 24.9 E(): 1.8e+02
banded Smith-Waterman score: 2086; 86.3% identity (86.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b21022 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :::::::: :::::::: ::::: ::: :: ::
b21022 AATCCTATGGACCTCAAGAGAGGAATTGACAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: :::::::::::::::::::::::::: ::::::::::: :: :: :: 
b21022 AAAAAAATTAGCAAACCTGTACAACATCACAAAGAAATAGCTCAAGTAGCCACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b21022 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGGAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b21022 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: ::::: :::
b21022 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b21022 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b21022 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: ::::::::::: ::: :::::::::: ::::: ::::::::::::
b21022 GAAGATATCGAAGGCGAAGCTTTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b21022 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b21031>
<pre>
>><a onClick="window.open('getRecord.php?id=b21031',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21031" target=_"blank">b21031</a> CP003795 Chlamydia psittaci M56                  (555 nt)
 initn: 2041 init1: 2041 opt: 2068  Z-score: 81.2  bits: 24.8 E(): 1.9e+02
banded Smith-Waterman score: 2068; 85.9% identity (85.9% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b21031 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b21031 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: :::::::::::::::::::::::::: ::::::::::: :: :: :: 
b21031 AAAAAAATTAGCAAACCTGTACAACATCACAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b21031 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGGAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: :::::::::::::: :: ::::: :::
b21031 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTTGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: ::::: :::
b21031 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b21031 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b21031 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: ::::::::::: ::: :::::::::: ::::: ::::::::::::
b21031 GAAGATATCGAAGGCGAAGCTTTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b21031 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b21028>
<pre>
>><a onClick="window.open('getRecord.php?id=b21028',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21028" target=_"blank">b21028</a> CP003796 Chlamydia psittaci WC                   (555 nt)
 initn: 2032 init1: 2032 opt: 2059  Z-score: 81.0  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2059; 85.7% identity (85.7% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b21028 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b21028 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b21028 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b21028 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b21028 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: ::::: :::
b21028 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b21028 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b21028 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b21028 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b21028 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b302>
<pre>
>><a onClick="window.open('getRecord.php?id=b302',
                                'cpndb_record'); return false;" href="getRecord.php?id=b302" target=_"blank">b302</a> AF109790 Chlamydophila abortus B577 ATCC VR-656    (555 nt)
 initn: 2017 init1: 2017 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b302   GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: ::::::::::: :: ::::: :: ::::: ::::: ::: :: ::
b302   AATCCTATGGACCTCAAAAGAGGTATTGATAAAGCTGTCAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::: :::::::::::::::::::::::::: :: :: :: 
b302   AAAAAAATTAGTAAACCTGTACAGCATCACAAAGAAATCGCTCAAGTAGCGACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :::::: : ::::: :: ::::: :: :: ::::: ::::::::::: :: :::
b302   GCTAACAATGATGCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTGGGGAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::: :: ::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b302   AACGGCTCTATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :: :: :: :: ::::::::: : :::::::: ::::: :::
b302   GGTATGAATTTCAACCGCGGGTATCTTTCTAGCTACTTCACTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b302   GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b302   GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: ::::::::::::::: :::: ::::: ::::: ::::::::::::
b302   GAAGATATCGAAGGCGAAGCTTTAGCAACTTTAGTCGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       ::::: :: ::::: 
b302   AGAGTGTGCGCAGTT
              550     

</pre>
<hr>
<A name=v4961>
<pre>
>><a onClick="window.open('getRecord.php?id=v4961',
                                'cpndb_record'); return false;" href="getRecord.php?id=v4961" target=_"blank">v4961</a> j0521 Chlamydophila abortus EP12                  (555 nt)
 initn: 2017 init1: 2017 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
v4961  GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: ::::::::::: :: ::::: :: ::::: ::::: ::: :: ::
v4961  AATCCTATGGACCTCAAAAGAGGTATTGATAAAGCTGTCAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::: :::::::::::::::::::::::::: :: :: :: 
v4961  AAAAAAATTAGTAAACCTGTACAGCATCACAAAGAAATCGCTCAAGTAGCGACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :::::: : ::::: :: ::::: :: :: ::::: ::::::::::: :: :::
v4961  GCTAACAATGATGCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTGGGGAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::: :: ::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
v4961  AACGGCTCTATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :: :: :: :: ::::::::: : :::::::: ::::: :::
v4961  GGTATGAATTTCAACCGCGGGTATCTTTCTAGCTACTTCACTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
v4961  GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
v4961  GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: ::::::::::::::: :::: ::::: ::::: ::::::::::::
v4961  GAAGATATCGAAGGCGAAGCTTTAGCAACTTTAGTCGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       ::::: :: ::::: 
v4961  AGAGTGTGCGCAGTT
              550     

</pre>
<hr>
<A name=b19087>
<pre>
>><a onClick="window.open('getRecord.php?id=b19087',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19087" target=_"blank">b19087</a> CP002804 Chlamydophila psittaci C19/98           (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b19087 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b19087 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b19087 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b19087 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b19087 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b19087 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b19087 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b19087 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b19087 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b19087 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b5067>
<pre>
>><a onClick="window.open('getRecord.php?id=b5067',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5067" target=_"blank">b5067</a> CR848038 Chlamydophila abortus S26/3              (555 nt)
 initn: 2017 init1: 2017 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b5067  GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: ::::::::::: :: ::::: :: ::::: ::::: ::: :: ::
b5067  AATCCTATGGACCTCAAAAGAGGTATTGATAAAGCTGTCAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::::::::::::::: :::::::::::::::::::::::::: :: :: :: 
b5067  AAAAAAATTAGTAAACCTGTACAGCATCACAAAGAAATCGCTCAAGTAGCGACGATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :::::: : ::::: :: ::::: :: :: ::::: ::::::::::: :: :::
b5067  GCTAACAATGATGCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTGGGGAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       ::::: :: ::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b5067  AACGGCTCTATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :: :: :: :: ::::::::: : :::::::: ::::: :::
b5067  GGTATGAATTTCAACCGCGGGTATCTTTCTAGCTACTTCACTACAAATCCTGAAACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b5067  GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b5067  GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: ::::::::::::::: :::: ::::: ::::: ::::::::::::
b5067  GAAGATATCGAAGGCGAAGCTTTAGCAACTTTAGTCGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       ::::: :: ::::: 
b5067  AGAGTGTGCGCAGTT
              550     

</pre>
<hr>
<A name=b21034>
<pre>
>><a onClick="window.open('getRecord.php?id=b21034',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21034" target=_"blank">b21034</a> CP003794 Chlamydia psittaci WS/RT/E30            (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b21034 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b21034 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b21034 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b21034 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b21034 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b21034 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b21034 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b21034 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b21034 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b21034 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b7500>
<pre>
>><a onClick="window.open('getRecord.php?id=b7500',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7500" target=_"blank">b7500</a> AY581777 Chlamydophila psittaci 6BC ATCC VR-125   (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b7500  GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b7500  AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b7500  AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b7500  GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b7500  AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b7500  GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b7500  GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b7500  GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b7500  GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b7500  AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b18654>
<pre>
>><a onClick="window.open('getRecord.php?id=b18654',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18654" target=_"blank">b18654</a> CP002549 Chlamydophila psittaci 6BC              (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b18654 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b18654 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b18654 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b18654 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b18654 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b18654 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b18654 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b18654 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b18654 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b18654 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b21037>
<pre>
>><a onClick="window.open('getRecord.php?id=b21037',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21037" target=_"blank">b21037</a> CP003793 Chlamydia psittaci VS225                (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b21037 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b21037 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b21037 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b21037 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b21037 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b21037 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b21037 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b21037 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b21037 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b21037 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<A name=b19084>
<pre>
>><a onClick="window.open('getRecord.php?id=b19084',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19084" target=_"blank">b19084</a> CP002805 Chlamydophila psittaci 01DC11           (555 nt)
 initn: 2023 init1: 2023 opt: 2050  Z-score: 80.8  bits: 24.8 E(): 2e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b15768 GCAACTGTTCTTGCAGAAGCAATCTACAGCGAAGGTCTAAGAAATGTCACTGCCGGTGCC
       :: ::::::::::: ::::: :::::::: :::::  : :::::::: ::::: :: :::
b19084 GCTACTGTTCTTGCTGAAGCTATCTACAGTGAAGGATTGAGAAATGTGACTGCAGGCGCC
               10        20        30        40        50        60

               70        80        90       100       110       120
b15768 AATCCTATGGACCTAAAAAGAGGTATCGACAAAGCCGTAAAAGTTGTTGTTGATGAACTC
       :::::::::::::: :: ::::: :: :: ::::: :::::::: ::::: ::: :: ::
b19084 AATCCTATGGACCTCAAGAGAGGAATTGATAAAGCTGTAAAAGTCGTTGTAGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b15768 AAAAAAATTAGTAAACCTGTACAACATCACAAAGAAATCGCTCAAGTAGCTACTATCTCA
       ::::::::::: ::::::::::::::::: :::::::: ::::::::::: :: :: :: 
b19084 AAAAAAATTAGCAAACCTGTACAACATCATAAAGAAATAGCTCAAGTAGCCACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b15768 GCAAATAATGATTCCGAAATCGGAAATCTTATTGCAGAAGCTATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::::: :: ::::: :: :: ::::: :::::::::::::: :::
b19084 GCTAACAACGATTCTGAAATTGGTAATCTCATCGCCGAAGCCATGGAAAAAGTTGGAAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b15768 AACGGATCCATTACTGTTGAAGAAGCTAAAGGCTTCGAAACTGTTCTCGACGTTGTAGAA
       :: :: :::::::::::::: ::::::::::: ::::::::::::::::: ::::: :::
b19084 AATGGCTCCATTACTGTTGAGGAAGCTAAAGGTTTCGAAACTGTTCTCGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b15768 GGAATGAACTTCAACCGTGGATACCTCTCCAGCTACTTCTCCACAAATCCAGAAACTCAA
       :: ::::: :::::::: :::::::: :: ::::::::::: :::::::: :: :: :::
b19084 GGTATGAATTTCAACCGAGGATACCTTTCTAGCTACTTCTCTACAAATCCTGAGACACAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15768 GAATGCGTTTTAGAAGACGCTCTGATTCTAATCTACGATAAAAAAATCTCTGGAATTAAA
       ::::: :: :::::::: :::::  : :: :::::::: :::::::: :: :::::::::
b19084 GAATGTGTGTTAGAAGAAGCTCTTGTGCTTATCTACGACAAAAAAATTTCCGGAATTAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b15768 GACTTCCTTCCAGTTTTACAACAAGTAGCAGAATCTGGACGCCCTCTTTTAATCATTGCA
       :: :::::::::::::::::::: ::::::::::: ::::: :: :: ::::: ::::: 
b19084 GATTTCCTTCCAGTTTTACAACAGGTAGCAGAATCCGGACGTCCCCTATTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15768 GAAGAAATTGAAGGAGAAGCTTTAGCAACTCTAGTAGTCAATAGACTCCGTGCAGGATTC
       ::::: :: ::::: :::::: :::: ::: :::::::::: ::::: ::::::::::::
b19084 GAAGATATCGAAGGCGAAGCTCTAGCTACTTTAGTAGTCAACAGACTACGTGCAGGATTC
              490       500       510       520       530       540

              550     
b15768 AGAGTCTGTGCAGTG
       :::::::: ::::: 
b19084 AGAGTCTGCGCAGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 03:22:05 2024 done: Mon Jul 22 03:22:07 2024
 Total Scan time:  2.320 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>