/var/www/html/cpndb/fasta_results/b15342.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b15342 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b15342
<pre>
  1>>>b15342 552 nt - 552 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0028;  K=1.617e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.220
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b13598',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13598" target=_"blank">b13598</a> NZ_ABWG01000005 Lactobacillus jensenii  ( 552) [f] 2760 27.1      40 <A HREF="#b13598">align</A>
<a onClick="window.open('getRecord.php?id=b7850',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7850" target=_"blank">b7850</a> AF429687 Lactobacillus jensenii ATCC 252 ( 552) [f] 2760 27.1      40 <A HREF="#b7850">align</A>
<a onClick="window.open('getRecord.php?id=b1432',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1432" target=_"blank">b1432</a> AY608421 Lactobacillus jensenii ATCC 252 ( 552) [f] 2760 27.1      40 <A HREF="#b1432">align</A>
<a onClick="window.open('getRecord.php?id=b35471',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35471" target=_"blank">b35471</a> NZ_KE384474 Lactobacillus psittaci DSM  ( 552) [f] 2706 26.9      46 <A HREF="#b35471">align</A>
<a onClick="window.open('getRecord.php?id=b35455',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35455" target=_"blank">b35455</a> SDGL01000006 Lactobacillus mulieris c10 ( 552) [f] 2544 26.2      73 <A HREF="#b35455">align</A>
<a onClick="window.open('getRecord.php?id=b3395',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3395" target=_"blank">b3395</a> AY123652 Lactobacillus gasseri ATCC 9857 ( 552) [f] 2121 24.5 2.4e+02 <A HREF="#b3395">align</A>
<a onClick="window.open('getRecord.php?id=b21131',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21131" target=_"blank">b21131</a> NC_018528 Lactobacillus helveticus R005 ( 552) [f] 2121 24.5 2.4e+02 <A HREF="#b21131">align</A>
<a onClick="window.open('getRecord.php?id=b18934',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18934" target=_"blank">b18934</a> CP002464 Lactobacillus johnsonii DPC 60 ( 552) [f] 2121 24.5 2.4e+02 <A HREF="#b18934">align</A>
<a onClick="window.open('getRecord.php?id=b19243',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19243" target=_"blank">b19243</a> AFQJ01000002 Lactobacillus johnsonii pf ( 552) [f] 2121 24.5 2.4e+02 <A HREF="#b19243">align</A>
<a onClick="window.open('getRecord.php?id=b34355',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34355" target=_"blank">b34355</a> NZ_GL379581 Lactobacillus  paragasseri  ( 552) [f] 2121 24.5 2.4e+02 <A HREF="#b34355">align</A>
<a onClick="window.open('getRecord.php?id=b33926',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33926" target=_"blank">b33926</a> NZ_AP018549 Lactobacillus  paragasseri  ( 552) [f] 2112 24.5 2.5e+02 <A HREF="#b33926">align</A>
<a onClick="window.open('getRecord.php?id=b10672',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10672" target=_"blank">b10672</a> CP000517 Lactobacillus helveticus DPC 4 ( 552) [f] 2112 24.5 2.5e+02 <A HREF="#b10672">align</A>
<a onClick="window.open('getRecord.php?id=b13777',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13777" target=_"blank">b13777</a> NZ_ACGR01000020 Lactobacillus johnsonii ( 552) [f] 2112 24.5 2.5e+02 <A HREF="#b13777">align</A>
<a onClick="window.open('getRecord.php?id=b10200',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10200" target=_"blank">b10200</a> EF571589 Lactobacillus johnsonii ATCC 3 ( 552) [f] 2112 24.5 2.5e+02 <A HREF="#b10200">align</A>
<a onClick="window.open('getRecord.php?id=b28213',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28213" target=_"blank">b28213</a> NZ_KN050667 Lactobacillus gasseri SJ-9E ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b28213">align</A>
<a onClick="window.open('getRecord.php?id=b5005',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5005" target=_"blank">b5005</a> NC_005362 Lactobacillus johnsonii NCC 53 ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b5005">align</A>
<a onClick="window.open('getRecord.php?id=b35350',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35350" target=_"blank">b35350</a> NZ_CP012890 Lactobacillus gallinarum HF ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b35350">align</A>
<a onClick="window.open('getRecord.php?id=b15942',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15942" target=_"blank">b15942</a> NZ_ADFT01000034 Lactobacillus gasseri 2 ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b15942">align</A>
<a onClick="window.open('getRecord.php?id=b20816',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20816" target=_"blank">b20816</a> AKFQ01000002 Lactobacillus gasseri CECT ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b20816">align</A>
<a onClick="window.open('getRecord.php?id=b15800',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15800" target=_"blank">b15800</a> CP000413 Lactobacillus gasseri ATCC 333 ( 552) [f] 2103 24.4 2.5e+02 <A HREF="#b15800">align</A>
</pre><p><hr><p>

>>>b15342, 552 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b13598>
<pre>
>><a onClick="window.open('getRecord.php?id=b13598',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13598" target=_"blank">b13598</a> NZ_ABWG01000005 Lactobacillus jensenii 1153      (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 93.5  bits: 27.1 E():   40
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13598 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       ::::::::::::
b13598 GTTGTTGCAGTT
              550  

</pre>
<hr>
<A name=b7850>
<pre>
>><a onClick="window.open('getRecord.php?id=b7850',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7850" target=_"blank">b7850</a> AF429687 Lactobacillus jensenii ATCC 25258        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 93.5  bits: 27.1 E():   40
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7850  GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       ::::::::::::
b7850  GTTGTTGCAGTT
              550  

</pre>
<hr>
<A name=b1432>
<pre>
>><a onClick="window.open('getRecord.php?id=b1432',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1432" target=_"blank">b1432</a> AY608421 Lactobacillus jensenii ATCC 25258        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 93.5  bits: 27.1 E():   40
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1432  GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       ::::::::::::
b1432  GTTGTTGCAGTT
              550  

</pre>
<hr>
<A name=b35471>
<pre>
>><a onClick="window.open('getRecord.php?id=b35471',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35471" target=_"blank">b35471</a> NZ_KE384474 Lactobacillus psittaci DSM 15354     (552 nt)
 initn: 2695 init1: 2695 opt: 2706  Z-score: 92.3  bits: 26.9 E():   46
banded Smith-Waterman score: 2706; 98.9% identity (98.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35471 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b35471 AACCCAGTTGGTATTCGTCGCGGGATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b35471 CACAAGATTAGCCACAAGGTTTCTGGTCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35471 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35471 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::: :::::::::::::::::::::::::::::::::::::: :::::::::
b35471 ATGCAATTTGACCGTGGTTACCTTTCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35471 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35471 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
b35471 GATGTTGAAGGTGAAGCTTTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b35471 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b35455>
<pre>
>><a onClick="window.open('getRecord.php?id=b35455',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35455" target=_"blank">b35455</a> SDGL01000006 Lactobacillus mulieris c10Ua161M    (552 nt)
 initn: 2544 init1: 2544 opt: 2544  Z-score: 88.8  bits: 26.2 E():   73
banded Smith-Waterman score: 2544; 95.7% identity (95.7% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::: ::::::
b35455 GCTACTGTTTTAACTCAAGCTATCGTTAATGAAGGTATGAAGAACGTAACTGCCGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::: :::::::::::::: ::::::::::: ::::::::::: 
b35455 AACCCTGTTGGTATTCGTCGTGGTATTGAAAAGGCTACTAAGGCTGCAGTTGATGAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :: ::::::::::::::::::::::::::::: :::::::: ::::::::::::::::::
b35455 CATAAGATTAGCCACAAGGTTTCTGGCCGTGACGAAATTGCACAAGTAGCTAGCGTATCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::: :: :::
b35455 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGATGCTATGGAAAAGGTTGGCCATGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b35455 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::: :::::::::::::::::::::::::::::::::::::: :::::::::
b35455 ATGCAATTTGACCGTGGTTACCTTTCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :: :: :::::::: :::::::::::::::::::::::::::::::::::::::::::::
b35455 GCTGATCTTGATAATCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : :::::::: :: ::::::::::::::::::::::: :::::::::
b35455 ATCTTGCCATTATTACAAGAAATTGTTCAACAAGGTAAGTCATTACTTATTATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b35455 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       ::::::::::::
b35455 GTTGTTGCAGTT
              550  

</pre>
<hr>
<A name=b3395>
<pre>
>><a onClick="window.open('getRecord.php?id=b3395',
                                'cpndb_record'); return false;" href="getRecord.php?id=b3395" target=_"blank">b3395</a> AY123652 Lactobacillus gasseri ATCC 9857          (552 nt)
 initn: 2110 init1: 2110 opt: 2121  Z-score: 79.5  bits: 24.5 E(): 2.4e+02
banded Smith-Waterman score: 2121; 87.1% identity (87.1% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::::
b3395  GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       :::::::::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b3395  AACCCAGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :: ::::::::      :   ::::::::::: ::::: :::   :: :::
b3395  CACAAGATCAGTCACAAGGTAAGCACCAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: ::::::::::: :::::::: ::::::::::::
b3395  TCAGCTTCAACTGAAGTTGGTAACTTAATTGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: :::::::::::::::::::: :: : ::::::::::::::::::::::: 
b3395  GGTGTTATCACAATTGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b3395  ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: :: :::::::: ::::::::::::::::::::::: 
b3395  GCAGACTTAGACAACCCTTACATTTTAATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::: : ::::::::::::
b3395  ATCTTGCCATTATTGCAAGAAATCGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: ::::::::::: :: 
b3395  GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTTAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b3395  GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b21131>
<pre>
>><a onClick="window.open('getRecord.php?id=b21131',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21131" target=_"blank">b21131</a> NC_018528 Lactobacillus helveticus R0052         (552 nt)
 initn: 2110 init1: 2110 opt: 2121  Z-score: 79.5  bits: 24.5 E(): 2.4e+02
banded Smith-Waterman score: 2121; 87.1% identity (87.1% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::: :::::::::::::::   ::::::::::::::::: ::::::::::::
b21131 GCTACTGTTTTGACTCAAGCTATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : 
b21131 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: ::::::::::::         ::: :::::::  : :: :::   :: :::
b21131 CACAAGATCAGCCACAAGGTTGAATCAAAGGATCAAATTGCTAACGTTGCTGCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          :::::  ::::::: :::   ::::: ::::: ::::::::::::::::::::::::
b21131 TCAGCTTCTAAAGAAGTTGGTGCTTTGATCGCTGATGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: : :::::::: :::   ::: : :::::::::::::::::::::::::: 
b21131 GGTGTTATCACTATTGAAGACTCACGTGGTATCAACACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::: ::::::::: : :::::::::::::::::::::::::: :::::::::
b21131 ATGCAATTTGACCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::::::::::: :::::::::::::: ::::: ::::::::::: ::::::::::: 
b21131 GCAGACCTTGATAATCCATACATCTTGATCACTGACAAGAAGATTTCAAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: :::::::: ::::::::  : ::::::::::: 
b21131 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGCAAGTCATTGTTGATCATTGCTGAC
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::    ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b21131 GATGTAACTGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b21131 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b18934>
<pre>
>><a onClick="window.open('getRecord.php?id=b18934',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18934" target=_"blank">b18934</a> CP002464 Lactobacillus johnsonii DPC 6026        (552 nt)
 initn: 2110 init1: 2110 opt: 2121  Z-score: 79.5  bits: 24.5 E(): 2.4e+02
banded Smith-Waterman score: 2121; 87.1% identity (87.1% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: ::::::   ::::::::::::::::: ::::::::::: 
b18934 GCTACTGTTTTAACTCAAGCAATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b18934 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::   :      :: :::::::: ::::: :::   :: :::
b18934 CACAAGATTAGCCACAAGGTAAGTACTAAGGACGAAATTGCTCAAGTTGCTTCGGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b18934 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::  : :::::::::::::::::: :: : ::::::::::::::::::::::: 
b18934 GGTGTTATTACTATTGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::::::::: :::::::::
b18934 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::::
b18934 GCAGACTTGGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : :::::::: :: ::::::::::::   ::: : ::::::::::::
b18934 ATCTTGCCATTATTACAAGAAATTGTTCAACAAGGTAAGAGTTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b18934 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b18934 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b19243>
<pre>
>><a onClick="window.open('getRecord.php?id=b19243',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19243" target=_"blank">b19243</a> AFQJ01000002 Lactobacillus johnsonii pf01        (552 nt)
 initn: 2110 init1: 2110 opt: 2121  Z-score: 79.5  bits: 24.5 E(): 2.4e+02
banded Smith-Waterman score: 2121; 87.1% identity (87.1% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: ::::::   ::::::::::::::::: ::::::::::: 
b19243 GCTACTGTTTTAACTCAAGCAATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b19243 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::   :      :: :::::::: ::::: :::   :: :::
b19243 CACAAGATTAGCCACAAGGTAAGTACTAAGGACGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b19243 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::  : :::::::::::::::::: :: : ::::::::::::::::::::::: 
b19243 GGTGTTATTACTATTGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : ::::::::::::::::::::::: :: :::::::::
b19243 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGACAATGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::::
b19243 GCAGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::: : ::::::::::::
b19243 ATCTTGCCATTATTACAAGAAATCGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b19243 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b19243 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b34355>
<pre>
>><a onClick="window.open('getRecord.php?id=b34355',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34355" target=_"blank">b34355</a> NZ_GL379581 Lactobacillus  paragasseri JV-V03    (552 nt)
 initn: 2110 init1: 2110 opt: 2121  Z-score: 79.5  bits: 24.5 E(): 2.4e+02
banded Smith-Waterman score: 2121; 87.1% identity (87.1% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::::
b34355 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       :::::::::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b34355 AACCCAGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :: ::::::::      :   ::::::::::: ::::: :::   :: :::
b34355 CACAAGATCAGTCACAAGGTAAGCACCAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: ::::::::::: :::::::: ::::::::::::
b34355 TCAGCTTCAACTGAAGTTGGTAACTTAATTGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: :::::::::::::::::::: :: : ::::::::::::::::::::::: 
b34355 GGTGTTATCACAATTGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b34355 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: :: :::::::: :::::: :::::::::::::::: 
b34355 GCAGACTTAGACAACCCTTACATTTTAATTACTGACAAGAAGGTTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   :: :: ::::::::::::
b34355 ATCTTGCCATTATTGCAAGAAATCGTTCAACAAGGTAAGAGTTTGCTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b34355 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b34355 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b33926>
<pre>
>><a onClick="window.open('getRecord.php?id=b33926',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33926" target=_"blank">b33926</a> NZ_AP018549 Lactobacillus  paragasseri JCM 5343  (552 nt)
 initn: 2101 init1: 2101 opt: 2112  Z-score: 79.3  bits: 24.5 E(): 2.5e+02
banded Smith-Waterman score: 2112; 87.0% identity (87.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::::
b33926 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       :::::::::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b33926 AACCCAGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :: ::::::::      :   ::::::::::: ::::: :::   :: :::
b33926 CACAAGATCAGTCACAAGGTAAGCACCAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: ::::::::::: :::::::: ::::::::::::
b33926 TCAGCTTCAACTGAAGTTGGTAACTTAATTGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: :::::::::::::::::::: :: : ::::::::::::::::::::::: 
b33926 GGTGTTATCACAATTGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b33926 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: :: :::::::: ::::::::::::::::::::::: 
b33926 GCAGACTTAGACAACCCTTACATTTTAATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::  : ::::::::::: 
b33926 ATCTTGCCATTATTGCAAGAAATCGTTCAACAAGGTAAGAGTTTGTTAATCATTGCTGAC
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b33926 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b33926 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b10672>
<pre>
>><a onClick="window.open('getRecord.php?id=b10672',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10672" target=_"blank">b10672</a> CP000517 Lactobacillus helveticus DPC 4571       (552 nt)
 initn: 2101 init1: 2101 opt: 2112  Z-score: 79.3  bits: 24.5 E(): 2.5e+02
banded Smith-Waterman score: 2112; 87.0% identity (87.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::: :::::::::::::::   ::::::::::::::::: ::::::::::::
b10672 GCTACTGTTTTGACTCAAGCTATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : 
b10672 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: ::::::::::::         ::: :::::::  : :: :::   :: :::
b10672 CACAAGATCAGCCACAAGGTTGAATCAAAGGATCAAATTGCTAACGTTGCTGCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          :::::  ::::::: :::   ::::: ::::: ::::::::::::::::::::::::
b10672 TCAGCTTCTAAAGAAGTTGGTGCTTTGATCGCTGATGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: : :::::::: :::   ::: : :::::::::::::::::::::::::: 
b10672 GGTGTTATCACTATTGAAGACTCACGTGGTATCAACACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::: ::::::::: : :::::::::::::::::::::::::: :::::::::
b10672 ATGCAATTTGACCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::::::::::: :::::::::::::: ::::: ::::::::::: ::::::::::: 
b10672 GCAGACCTTGATAATCCATACATCTTGATCACTGACAAGAAGATTTCAAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: :::::::: ::::::::  : ::::::::::: 
b10672 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGCAAGTCATTGTTGATCATTGCTGAC
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       ::: :    ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b10672 GATATAACTGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b10672 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b13777>
<pre>
>><a onClick="window.open('getRecord.php?id=b13777',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13777" target=_"blank">b13777</a> NZ_ACGR01000020 Lactobacillus johnsonii ATCC 33  (552 nt)
 initn: 2101 init1: 2101 opt: 2112  Z-score: 79.3  bits: 24.5 E(): 2.5e+02
banded Smith-Waterman score: 2112; 87.0% identity (87.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b13777 GCTACTGTTTTAACTCAAGCAATAGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b13777 AACCCTGTTGGTATTCGTCGCGGTATTGAAATTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::   :      :: :::::::: ::::: :::   :: :::
b13777 CACAAGATTAGCCACAAGGTAAGTACTAAGGACGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b13777 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::  : :::::::::::::: ::: :: : ::::::::::::::::::::::: 
b13777 GGTGTTATTACTATTGAAGAATCAAAAGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::::::::: :::::::::
b13777 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::::
b13777 GCAGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::: : ::::::::::::
b13777 ATCTTGCCATTATTACAAGAAATCGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b13777 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b13777 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b10200>
<pre>
>><a onClick="window.open('getRecord.php?id=b10200',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10200" target=_"blank">b10200</a> EF571589 Lactobacillus johnsonii ATCC 33200      (552 nt)
 initn: 2101 init1: 2101 opt: 2112  Z-score: 79.3  bits: 24.5 E(): 2.5e+02
banded Smith-Waterman score: 2112; 87.0% identity (87.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b10200 GCTACTGTTTTAACTCAAGCAATAGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b10200 AACCCTGTTGGTATTCGTCGCGGTATTGAAATTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::   :      :: :::::::: ::::: :::   :: :::
b10200 CACAAGATTAGCCACAAGGTAAGTACTAAGGACGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b10200 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::  : :::::::::::::: ::: :: : ::::::::::::::::::::::: 
b10200 GGTGTTATTACTATTGAAGAATCAAAAGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::::::::: :::::::::
b10200 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::::
b10200 GCAGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::: : ::::::::::::
b10200 ATCTTGCCATTATTACAAGAAATCGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b10200 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b10200 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b28213>
<pre>
>><a onClick="window.open('getRecord.php?id=b28213',
                                'cpndb_record'); return false;" href="getRecord.php?id=b28213" target=_"blank">b28213</a> NZ_KN050667 Lactobacillus gasseri SJ-9E-US       (552 nt)
 initn: 2092 init1: 2092 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b28213 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :::::::: :: :::::::: ::::::
b28213 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCAACTAAAGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :::::::::::          ::::::::::: ::::: :::   :: :::
b28213 CACAAGATCAGCCACAAGGTAAGCACTAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b28213 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: ::::::: :::::::::::: :: : ::::::::::::::::::::::: 
b28213 GGTGTTATCACAATTGAGGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b28213 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :: ::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::: 
b28213 GCCGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: ::::::::::::   ::: : ::::::::::::
b28213 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b28213 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b28213 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b5005>
<pre>
>><a onClick="window.open('getRecord.php?id=b5005',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5005" target=_"blank">b5005</a> NC_005362 Lactobacillus johnsonii NCC 533         (552 nt)
 initn: 2092 init1: 2092 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: ::::::   ::::::::::::::::: ::::::::::: 
b5005  GCTACTGTTTTAACTCAAGCAATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :: :::::::: :::::::: ::::::
b5005  AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCTACTAAGGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       ::::::::::::::::::::   :      :: :::::::: ::::: :::   :: :::
b5005  CACAAGATTAGCCACAAGGTAAGTACTAAGGACGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b5005  TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::  : :: ::::::::::::::: :: : ::::::::::::::::::::::: 
b5005  GGTGTTATTACTATCGAAGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : ::::::::::::::::::::::: :: :::::::::
b5005  ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGACAATGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::::
b5005  GCAGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAT
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       :::::::::::: : ::::::::::: ::::::::::::   ::: : ::::::::::::
b5005  ATCTTGCCATTATTACAAGAAATCGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::: ::::::
b5005  GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACGTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b5005  GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b35350>
<pre>
>><a onClick="window.open('getRecord.php?id=b35350',
                                'cpndb_record'); return false;" href="getRecord.php?id=b35350" target=_"blank">b35350</a> NZ_CP012890 Lactobacillus gallinarum HFD4        (552 nt)
 initn: 2095 init1: 2095 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       ::::::::::: :::::::::::::::   ::::::::::::::::: ::::::::::::
b35350 GCTACTGTTTTGACTCAAGCTATCGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : 
b35350 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAACTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: ::::::::::::         ::: :::::::  : :: :::   :: :::
b35350 CACAAGATCAGCCACAAGGTTGAATCAAAGGATCAAATTGCTAACGTTGCTGCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          :::::  ::::::: :::   ::::: ::::: ::::::::::::::::::::::::
b35350 TCAGCTTCTAAAGAAGTTGGTGCTTTGATCGCTGATGCTATGGAAAAGGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: : :::::::: :::   ::: : :::::::::::::::::::::::::: 
b35350 GGTGTTATCACTATTGAAGACTCACGTGGTATCAACACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       ::::::::::: ::::::::: : :::::::::::::::::::::::::: :::::::::
b35350 ATGCAATTTGACCGTGGTTACTTATCACAATACATGGTAACTGACAACGACAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :::::::::::::: :::::::::::::: ::::: ::::::::::: ::::::::::: 
b35350 GCAGACCTTGATAATCCATACATCTTGATCACTGACAAGAAGATTTCAAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: :::::::: ::::::::  : ::::::::::: 
b35350 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGCAAGTCATTGTTGATCATTGCTGAC
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::    ::::::::  : ::::::::::::::::::::::: :::::::::::::::
b35350 GATGTAACTGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAC
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       ::::: ::  ::
b35350 GTTGTAGCTATT
              550  

</pre>
<hr>
<A name=b15942>
<pre>
>><a onClick="window.open('getRecord.php?id=b15942',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15942" target=_"blank">b15942</a> NZ_ADFT01000034 Lactobacillus gasseri 224-1      (552 nt)
 initn: 2092 init1: 2092 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b15942 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :::::::: :: :::::::: ::::::
b15942 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCAACTAAAGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :::::::::::          ::::::::::: ::::: :::   :: :::
b15942 CACAAGATCAGCCACAAGGTAAGCACTAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b15942 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: ::::::: :::::::::::: :: : ::::::::::::::::::::::: 
b15942 GGTGTTATCACAATTGAGGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b15942 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :: ::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::: 
b15942 GCCGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: ::::::::::::   ::: : ::::::::::::
b15942 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b15942 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b15942 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b20816>
<pre>
>><a onClick="window.open('getRecord.php?id=b20816',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20816" target=_"blank">b20816</a> AKFQ01000002 Lactobacillus gasseri CECT 5714     (552 nt)
 initn: 2092 init1: 2092 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b20816 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :::::::: :: :::::::: ::::::
b20816 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCAACTAAAGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :::::::::::          ::::::::::: ::::: :::   :: :::
b20816 CACAAGATCAGCCACAAGGTAAGCACTAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b20816 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: ::::::: :::::::::::: :: : ::::::::::::::::::::::: 
b20816 GGTGTTATCACAATTGAGGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b20816 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :: ::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::: 
b20816 GCCGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: ::::::::::::   ::: : ::::::::::::
b20816 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b20816 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b20816 GTTGTTGCTGTT
              550  

</pre>
<hr>
<A name=b15800>
<pre>
>><a onClick="window.open('getRecord.php?id=b15800',
                                'cpndb_record'); return false;" href="getRecord.php?id=b15800" target=_"blank">b15800</a> CP000413 Lactobacillus gasseri ATCC 33323        (552 nt)
 initn: 2092 init1: 2092 opt: 2103  Z-score: 79.1  bits: 24.4 E(): 2.5e+02
banded Smith-Waterman score: 2103; 86.8% identity (86.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b15342 GCTACTGTTTTAACTCAAGCTATCGTTAACGAAGGTATGAAGAACGTAACTGCTGGTGCT
       :::::::::::::::::::: :: :::   ::::::::::::::::: ::::::::::: 
b15800 GCTACTGTTTTAACTCAAGCAATTGTTCGTGAAGGTATGAAGAACGTTACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b15342 AACCCAGTTGGTATTCGTCGCGGTATTGAAAAGGCAACTAAGGCTGCTGTTGATGAATTA
       ::::: :::::::::::::::::::::::::  :::::::: :: :::::::: ::::::
b15800 AACCCTGTTGGTATTCGTCGCGGTATTGAAACTGCAACTAAAGCAGCTGTTGACGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b15342 CACAAGATTAGCCACAAGGTTTCTGGCCGTGATGAAATTGCCCAAGTAGCTAGCGTATCA
       :::::::: :::::::::::          ::::::::::: ::::: :::   :: :::
b15800 CACAAGATCAGCCACAAGGTAAGCACTAAGGATGAAATTGCTCAAGTTGCTTCTGTTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b15342 AGTGCTTCAGAAGAAGTAGGTAACTTGATTGCTGACGCTATGGAAAAGGTTGGTCACGAT
          ::::::   ::::: :::::::: :: :::::::: :::::::: ::::::::::::
b15800 TCAGCTTCAACTGAAGTTGGTAACTTAATCGCTGACGCAATGGAAAAAGTTGGTCACGAT
              190       200       210       220       230       240

              250       260       270       280       290       300
b15342 GGTGTTATCTCAATTGAAGAATCAAAGGGTGTTAACACTGAACTTTCAGTAGTTGAAGGG
       ::::::::: ::::::: :::::::::::: :: : ::::::::::::::::::::::: 
b15800 GGTGTTATCACAATTGAGGAATCAAAGGGTATTGATACTGAACTTTCAGTAGTTGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b15342 ATGCAATTTGATCGTGGTTACCTTTCACAATACATGGTAACTGACAACGATAAGATGGAA
       :::::::: :::::::::::: : :::::::::::::::::::: :::::::::::::::
b15800 ATGCAATTCGATCGTGGTTACTTATCACAATACATGGTAACTGATAACGATAAGATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b15342 GCAGACCTTGATAACCCATACATCTTGATTACTGATAAGAAGATTTCTAACATTCAAGAT
       :: ::: : :: ::::: ::::: ::::::::::: ::::::::::::::::::::::: 
b15800 GCCGACTTAGACAACCCTTACATTTTGATTACTGACAAGAAGATTTCTAACATTCAAGAC
              370       380       390       400       410       420

              430       440       450       460       470       480
b15342 ATCTTGCCATTACTTCAAGAAATCGTACAACAAGGTAAGTCATTACTTATCATTGCTGAT
       ::::::::::::::::::::::: :: ::::::::::::   ::: : ::::::::::::
b15800 ATCTTGCCATTACTTCAAGAAATTGTTCAACAAGGTAAGAGCTTATTAATCATTGCTGAT
              430       440       450       460       470       480

              490       500       510       520       530       540
b15342 GATGTTGAAGGTGAAGCATTACCAACTCTTGTTTTGAACAAGATTCGTGGTACTTTCAAC
       :::::::: ::::::::  : ::::::::::::::::::::::: :::::::::::::: 
b15800 GATGTTGATGGTGAAGCTCTTCCAACTCTTGTTTTGAACAAGATCCGTGGTACTTTCAAT
              490       500       510       520       530       540

              550  
b15342 GTTGTTGCAGTT
       :::::::: :::
b15800 GTTGTTGCTGTT
              550  

</pre>
<hr>
<p><pre>


552 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 03:18:56 2024 done: Mon Jul 22 03:18:58 2024
 Total Scan time:  2.220 Total Display time:  0.020

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>