/var/www/html/cpndb/fasta_results/b14059.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b14059 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b14059
<pre>
  1>>>b14059 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0029;  K=1.553e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.360
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b19617',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19617" target=_"blank">b19617</a> CP002401 Chlamydia trachomatis A2497    ( 555) [f] 2775 27.8      25 <A HREF="#b19617">align</A>
<a onClick="window.open('getRecord.php?id=b7714',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7714" target=_"blank">b7714</a> CP000051 Chlamydia trachomatis A/HAR-13  ( 555) [f] 2775 27.8      25 <A HREF="#b7714">align</A>
<a onClick="window.open('getRecord.php?id=b22725',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22725" target=_"blank">b22725</a> HE601810 Chlamydia trachomatis A/5291   ( 555) [f] 2775 27.8      25 <A HREF="#b22725">align</A>
<a onClick="window.open('getRecord.php?id=b22722',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22722" target=_"blank">b22722</a> HE601797 Chlamydia trachomatis A/7249   ( 555) [f] 2775 27.8      25 <A HREF="#b22722">align</A>
<a onClick="window.open('getRecord.php?id=b22718',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22718" target=_"blank">b22718</a> HE601796 Chlamydia trachomatis A/363    ( 555) [f] 2775 27.8      25 <A HREF="#b22718">align</A>
<a onClick="window.open('getRecord.php?id=b22802',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22802" target=_"blank">b22802</a> HE601795 Chlamydia trachomatis L2b/8200 ( 555) [f] 2757 27.7      27 <A HREF="#b22802">align</A>
<a onClick="window.open('getRecord.php?id=b10734',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10734" target=_"blank">b10734</a> AM884177 Chlamydia trachomatis L2b/UCH- ( 555) [f] 2757 27.7      27 <A HREF="#b10734">align</A>
<a onClick="window.open('getRecord.php?id=b22847',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22847" target=_"blank">b22847</a> HE601962 Chlamydia trachomatis L2b/Ams3 ( 555) [f] 2757 27.7      27 <A HREF="#b22847">align</A>
<a onClick="window.open('getRecord.php?id=b22838',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22838" target=_"blank">b22838</a> HE601965 Chlamydia trachomatis L2b/Ams5 ( 555) [f] 2757 27.7      27 <A HREF="#b22838">align</A>
<a onClick="window.open('getRecord.php?id=b22832',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22832" target=_"blank">b22832</a> HE601950 Chlamydia trachomatis L1/440/L ( 555) [f] 2757 27.7      27 <A HREF="#b22832">align</A>
<a onClick="window.open('getRecord.php?id=b22850',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22850" target=_"blank">b22850</a> HE601961 Chlamydia trachomatis L2b/Ams2 ( 555) [f] 2757 27.7      27 <A HREF="#b22850">align</A>
<a onClick="window.open('getRecord.php?id=b22835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22835" target=_"blank">b22835</a> HE601951 Chlamydia trachomatis L1/1322/ ( 555) [f] 2757 27.7      27 <A HREF="#b22835">align</A>
<a onClick="window.open('getRecord.php?id=b22844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22844" target=_"blank">b22844</a> HE601963 Chlamydia trachomatis L2b/Cana ( 555) [f] 2757 27.7      27 <A HREF="#b22844">align</A>
<a onClick="window.open('getRecord.php?id=b22841',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22841" target=_"blank">b22841</a> HE601964 Chlamydia trachomatis L2b/Ams4 ( 555) [f] 2757 27.7      27 <A HREF="#b22841">align</A>
<a onClick="window.open('getRecord.php?id=b22859',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22859" target=_"blank">b22859</a> HE601957 Chlamydia trachomatis L2b/Cana ( 555) [f] 2757 27.7      27 <A HREF="#b22859">align</A>
<a onClick="window.open('getRecord.php?id=b22856',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22856" target=_"blank">b22856</a> HE601958 Chlamydia trachomatis L2b/LST  ( 555) [f] 2757 27.7      27 <A HREF="#b22856">align</A>
<a onClick="window.open('getRecord.php?id=b22853',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22853" target=_"blank">b22853</a> HE601959 Chlamydia trachomatis L2b/Ams1 ( 555) [f] 2757 27.7      27 <A HREF="#b22853">align</A>
<a onClick="window.open('getRecord.php?id=b22871',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22871" target=_"blank">b22871</a> HE601953 Chlamydia trachomatis L1/224   ( 555) [f] 2757 27.7      27 <A HREF="#b22871">align</A>
<a onClick="window.open('getRecord.php?id=b22829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22829" target=_"blank">b22829</a> HE601949 Chlamydia trachomatis L2b/795  ( 555) [f] 2757 27.7      27 <A HREF="#b22829">align</A>
<a onClick="window.open('getRecord.php?id=b10736',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10736" target=_"blank">b10736</a> AM884176 Chlamydia trachomatis L2/434/B ( 555) [f] 2757 27.7      27 <A HREF="#b10736">align</A>
</pre><p><hr><p>

>>>b14059, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b19617>
<pre>
>><a onClick="window.open('getRecord.php?id=b19617',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19617" target=_"blank">b19617</a> CP002401 Chlamydia trachomatis A2497             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.0  bits: 27.8 E():   25
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19617 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b19617 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b7714>
<pre>
>><a onClick="window.open('getRecord.php?id=b7714',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7714" target=_"blank">b7714</a> CP000051 Chlamydia trachomatis A/HAR-13           (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.0  bits: 27.8 E():   25
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7714  GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b7714  CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22725>
<pre>
>><a onClick="window.open('getRecord.php?id=b22725',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22725" target=_"blank">b22725</a> HE601810 Chlamydia trachomatis A/5291            (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.0  bits: 27.8 E():   25
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22725 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22725 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22722>
<pre>
>><a onClick="window.open('getRecord.php?id=b22722',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22722" target=_"blank">b22722</a> HE601797 Chlamydia trachomatis A/7249            (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.0  bits: 27.8 E():   25
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22722 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22722 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22718>
<pre>
>><a onClick="window.open('getRecord.php?id=b22718',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22718" target=_"blank">b22718</a> HE601796 Chlamydia trachomatis A/363             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 97.0  bits: 27.8 E():   25
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22718 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22718 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22802>
<pre>
>><a onClick="window.open('getRecord.php?id=b22802',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22802" target=_"blank">b22802</a> HE601795 Chlamydia trachomatis L2b/8200/07       (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22802 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22802 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22802 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22802 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b10734>
<pre>
>><a onClick="window.open('getRecord.php?id=b10734',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10734" target=_"blank">b10734</a> AM884177 Chlamydia trachomatis L2b/UCH-1/procti  (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b10734 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b10734 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10734 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b10734 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22847>
<pre>
>><a onClick="window.open('getRecord.php?id=b22847',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22847" target=_"blank">b22847</a> HE601962 Chlamydia trachomatis L2b/Ams3          (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22847 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22847 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22847 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22847 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22838>
<pre>
>><a onClick="window.open('getRecord.php?id=b22838',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22838" target=_"blank">b22838</a> HE601965 Chlamydia trachomatis L2b/Ams5          (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22838 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22838 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22838 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22838 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22832>
<pre>
>><a onClick="window.open('getRecord.php?id=b22832',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22832" target=_"blank">b22832</a> HE601950 Chlamydia trachomatis L1/440/LN         (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22832 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22832 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22832 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22832 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22850>
<pre>
>><a onClick="window.open('getRecord.php?id=b22850',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22850" target=_"blank">b22850</a> HE601961 Chlamydia trachomatis L2b/Ams2          (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22850 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22850 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22850 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22850 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22835>
<pre>
>><a onClick="window.open('getRecord.php?id=b22835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22835" target=_"blank">b22835</a> HE601951 Chlamydia trachomatis L1/1322/p2        (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22835 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22835 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22835 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22835 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22844>
<pre>
>><a onClick="window.open('getRecord.php?id=b22844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22844" target=_"blank">b22844</a> HE601963 Chlamydia trachomatis L2b/Canada1       (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22844 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22844 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22844 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22844 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22841>
<pre>
>><a onClick="window.open('getRecord.php?id=b22841',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22841" target=_"blank">b22841</a> HE601964 Chlamydia trachomatis L2b/Ams4          (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22841 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22841 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22841 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22841 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22859>
<pre>
>><a onClick="window.open('getRecord.php?id=b22859',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22859" target=_"blank">b22859</a> HE601957 Chlamydia trachomatis L2b/Canada2       (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22859 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22859 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22859 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22859 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22856>
<pre>
>><a onClick="window.open('getRecord.php?id=b22856',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22856" target=_"blank">b22856</a> HE601958 Chlamydia trachomatis L2b/LST           (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22856 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22856 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22856 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22856 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22853>
<pre>
>><a onClick="window.open('getRecord.php?id=b22853',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22853" target=_"blank">b22853</a> HE601959 Chlamydia trachomatis L2b/Ams1          (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22853 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22853 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22853 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22853 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22871>
<pre>
>><a onClick="window.open('getRecord.php?id=b22871',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22871" target=_"blank">b22871</a> HE601953 Chlamydia trachomatis L1/224            (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22871 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22871 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22871 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22871 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b22829>
<pre>
>><a onClick="window.open('getRecord.php?id=b22829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22829" target=_"blank">b22829</a> HE601949 Chlamydia trachomatis L2b/795           (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b22829 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b22829 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22829 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b22829 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<A name=b10736>
<pre>
>><a onClick="window.open('getRecord.php?id=b10736',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10736" target=_"blank">b10736</a> AM884176 Chlamydia trachomatis L2/434/Bu         (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 96.6  bits: 27.7 E():   27
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b14059 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 GCTACTGTTCTTGCTGAAGCTATCTATACAGAAGGATTACGCAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b14059 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAATC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
b10736 AATCCAATGGACCTCAAACGAGGTATTGATAAAGCTGTTAAGGTTGTTGTTGATCAAGTC
               70        80        90       100       110       120

              130       140       150       160       170       180
b14059 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 AAAAAAATCAGCAAGCCTGTTCAGCATCATAAAGAAATTGCTCAAGTTGCAACAATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b14059 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 GCTAATAATGATGCAGAAATCGGGAATCTGATTGCTGAAGCAATGGAGAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b14059 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 AACGGCTCTATCACTGTTGAAGAAGCAAAAGGATTTGAAACCGTTTTGGATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b14059 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 GGAATGAATTTCAATAGAGGTTACCTCTCTAGCTACTTCGCAACAAATCCAGAAACTCAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b14059 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 GAATGTGTATTAGAAGACGCTTTGGTTCTAATCTACGATAAGAAAATTTCTGGGATCAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b14059 GATTTCCTTCCTATTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
b10736 GATTTCCTTCCTGTTTTACAACAAGTTGCTGAATCCGGCCGTCCTCTTCTTATTATAGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b14059 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10736 GAAGACATTGAAGGCGAAGCTTTAGCTACTTTGGTCGTGAACAGAATTCGTGGAGGATTC
              490       500       510       520       530       540

              550     
b14059 CGGGTTTGCGCAGTT
       :::::::::::::::
b10736 CGGGTTTGCGCAGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 03:00:16 2024 done: Mon Jul 22 03:00:19 2024
 Total Scan time:  2.360 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>