/var/www/html/cpndb/fasta_results/b13544.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b13544 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b13544
<pre>
  1>>>b13544 552 nt - 552 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0025;  K=1.356e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.250
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b7474',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7474" target=_"blank">b7474</a> AY922351 Listeria monocytogenes serotype ( 552) [f] 2760 26.3      72 <A HREF="#b7474">align</A>
<a onClick="window.open('getRecord.php?id=v1607',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1607" target=_"blank">v1607</a> 3255 Listeria monocytogenes FP81-2       ( 552) [f] 2760 26.3      72 <A HREF="#v1607">align</A>
<a onClick="window.open('getRecord.php?id=b19216',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19216" target=_"blank">b19216</a> AFBU01000036 Listeria monocytogenes J18 ( 552) [f] 2760 26.3      72 <A HREF="#b19216">align</A>
<a onClick="window.open('getRecord.php?id=b21207',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21207" target=_"blank">b21207</a> NC_018642 Listeria monocytogenes L312   ( 552) [f] 2760 26.3      72 <A HREF="#b21207">align</A>
<a onClick="window.open('getRecord.php?id=b21052',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21052" target=_"blank">b21052</a> NC_018585 Listeria monocytogenes SLCC23 ( 552) [f] 2760 26.3      72 <A HREF="#b21052">align</A>
<a onClick="window.open('getRecord.php?id=b20628',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20628" target=_"blank">b20628</a> NC_017728 Listeria monocytogenes 07PF07 ( 552) [f] 2760 26.3      72 <A HREF="#b20628">align</A>
<a onClick="window.open('getRecord.php?id=v1606',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1606" target=_"blank">v1606</a> 3254 Listeria monocytogenes FP73-4       ( 552) [f] 2760 26.3      72 <A HREF="#v1606">align</A>
<a onClick="window.open('getRecord.php?id=b18799',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18799" target=_"blank">b18799</a> AFBU01000036 Listeria monocytogenes 181 ( 552) [f] 2760 26.3      72 <A HREF="#b18799">align</A>
<a onClick="window.open('getRecord.php?id=v1605',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1605" target=_"blank">v1605</a> 3251 Listeria monocytogenes FP72-1       ( 552) [f] 2760 26.3      72 <A HREF="#v1605">align</A>
<a onClick="window.open('getRecord.php?id=b7475',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7475" target=_"blank">b7475</a> AY922352 Listeria monocytogenes ATCC 191 ( 552) [f] 2760 26.3      72 <A HREF="#b7475">align</A>
<a onClick="window.open('getRecord.php?id=b5481',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5481" target=_"blank">b5481</a> NC_002973 Listeria monocytogenes 4b F236 ( 552) [f] 2760 26.3      72 <A HREF="#b5481">align</A>
<a onClick="window.open('getRecord.php?id=b21817',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21817" target=_"blank">b21817</a> NC_018591 Listeria monocytogenes seroty ( 552) [f] 2751 26.2      73 <A HREF="#b21817">align</A>
<a onClick="window.open('getRecord.php?id=b10375',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10375" target=_"blank">b10375</a> NZ_AARP04000018 Listeria monocytogenes  ( 552) [f] 2751 26.2      73 <A HREF="#b10375">align</A>
<a onClick="window.open('getRecord.php?id=b10810',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10810" target=_"blank">b10810</a> NZ_AARJ01000031 Listeria monocytogenes  ( 552) [f] 2742 26.2      75 <A HREF="#b10810">align</A>
<a onClick="window.open('getRecord.php?id=b7472',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7472" target=_"blank">b7472</a> AY922349 Listeria monocytogenes serotype ( 552) [f] 2724 26.1      78 <A HREF="#b7472">align</A>
<a onClick="window.open('getRecord.php?id=b21117',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21117" target=_"blank">b21117</a> NC_018590 Listeria monocytogenes SLCC23 ( 552) [f] 2724 26.1      78 <A HREF="#b21117">align</A>
<a onClick="window.open('getRecord.php?id=b19191',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19191" target=_"blank">b19191</a> CP002816 Listeria monocytogenes M7      ( 552) [f] 2724 26.1      78 <A HREF="#b19191">align</A>
<a onClick="window.open('getRecord.php?id=b10861',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10861" target=_"blank">b10861</a> NZ_AARN02000031 Listeria monocytogenes  ( 552) [f] 2724 26.1      78 <A HREF="#b10861">align</A>
<a onClick="window.open('getRecord.php?id=b22755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22755" target=_"blank">b22755</a> HE999704 Listeria monocytogenes La111   ( 552) [f] 2706 26.1      82 <A HREF="#b22755">align</A>
<a onClick="window.open('getRecord.php?id=b22754',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22754" target=_"blank">b22754</a> HE999705 Listeria monocytogenes N53-1   ( 552) [f] 2706 26.1      82 <A HREF="#b22754">align</A>
</pre><p><hr><p>

>>>b13544, 552 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b7474>
<pre>
>><a onClick="window.open('getRecord.php?id=b7474',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7474" target=_"blank">b7474</a> AY922351 Listeria monocytogenes serotype4d ATCC   (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7474  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b7474  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=v1607>
<pre>
>><a onClick="window.open('getRecord.php?id=v1607',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1607" target=_"blank">v1607</a> 3255 Listeria monocytogenes FP81-2                (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1607  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
v1607  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b19216>
<pre>
>><a onClick="window.open('getRecord.php?id=b19216',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19216" target=_"blank">b19216</a> AFBU01000036 Listeria monocytogenes J1816        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19216 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b19216 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21207>
<pre>
>><a onClick="window.open('getRecord.php?id=b21207',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21207" target=_"blank">b21207</a> NC_018642 Listeria monocytogenes L312            (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21207 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b21207 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21052>
<pre>
>><a onClick="window.open('getRecord.php?id=b21052',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21052" target=_"blank">b21052</a> NC_018585 Listeria monocytogenes SLCC2378        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21052 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b21052 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b20628>
<pre>
>><a onClick="window.open('getRecord.php?id=b20628',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20628" target=_"blank">b20628</a> NC_017728 Listeria monocytogenes 07PF0776        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20628 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b20628 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=v1606>
<pre>
>><a onClick="window.open('getRecord.php?id=v1606',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1606" target=_"blank">v1606</a> 3254 Listeria monocytogenes FP73-4                (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1606  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
v1606  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b18799>
<pre>
>><a onClick="window.open('getRecord.php?id=b18799',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18799" target=_"blank">b18799</a> AFBU01000036 Listeria monocytogenes 1816         (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18799 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b18799 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=v1605>
<pre>
>><a onClick="window.open('getRecord.php?id=v1605',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1605" target=_"blank">v1605</a> 3251 Listeria monocytogenes FP72-1                (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1605  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
v1605  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b7475>
<pre>
>><a onClick="window.open('getRecord.php?id=b7475',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7475" target=_"blank">b7475</a> AY922352 Listeria monocytogenes ATCC 19118        (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b7475  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b5481>
<pre>
>><a onClick="window.open('getRecord.php?id=b5481',
                                'cpndb_record'); return false;" href="getRecord.php?id=b5481" target=_"blank">b5481</a> NC_002973 Listeria monocytogenes 4b F2365         (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 89.0  bits: 26.3 E():   72
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b5481  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b5481  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21817>
<pre>
>><a onClick="window.open('getRecord.php?id=b21817',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21817" target=_"blank">b21817</a> NC_018591 Listeria monocytogenes serotype 7 str  (552 nt)
 initn: 2730 init1: 2730 opt: 2751  Z-score: 88.8  bits: 26.2 E():   73
banded Smith-Waterman score: 2751; 99.8% identity (99.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 GCTACTGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21817 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b21817 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10375>
<pre>
>><a onClick="window.open('getRecord.php?id=b10375',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10375" target=_"blank">b10375</a> NZ_AARP04000018 Listeria monocytogenes FSL N1-0  (552 nt)
 initn: 2730 init1: 2730 opt: 2751  Z-score: 88.8  bits: 26.2 E():   73
banded Smith-Waterman score: 2751; 99.8% identity (99.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 GCTACTGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10375 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b10375 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10810>
<pre>
>><a onClick="window.open('getRecord.php?id=b10810',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10810" target=_"blank">b10810</a> NZ_AARJ01000031 Listeria monocytogenes FSL J1-1  (552 nt)
 initn: 2742 init1: 2742 opt: 2742  Z-score: 88.6  bits: 26.2 E():   75
banded Smith-Waterman score: 2742; 99.6% identity (99.6% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
b10810 AATCCAGTAGGCGTTCGTCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b10810 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATTATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10810 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b10810 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b7472>
<pre>
>><a onClick="window.open('getRecord.php?id=b7472',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7472" target=_"blank">b7472</a> AY922349 Listeria monocytogenes serotype4a ATCC   (552 nt)
 initn: 2724 init1: 2724 opt: 2724  Z-score: 88.3  bits: 26.1 E():   78
banded Smith-Waterman score: 2724; 99.3% identity (99.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b7472  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b7472  GCAGTTCTTGAAAAACCATATATTTTAATTACAGATAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7472  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b7472  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21117>
<pre>
>><a onClick="window.open('getRecord.php?id=b21117',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21117" target=_"blank">b21117</a> NC_018590 Listeria monocytogenes SLCC2376        (552 nt)
 initn: 2724 init1: 2724 opt: 2724  Z-score: 88.3  bits: 26.1 E():   78
banded Smith-Waterman score: 2724; 99.3% identity (99.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b21117 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b21117 GCAGTTCTTGAAAAACCATATATTTTAATTACAGATAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21117 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b21117 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b19191>
<pre>
>><a onClick="window.open('getRecord.php?id=b19191',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19191" target=_"blank">b19191</a> CP002816 Listeria monocytogenes M7               (552 nt)
 initn: 2724 init1: 2724 opt: 2724  Z-score: 88.3  bits: 26.1 E():   78
banded Smith-Waterman score: 2724; 99.3% identity (99.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b19191 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b19191 GCAGTTCTTGAAAAACCATATATTTTAATTACAGATAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b19191 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10861>
<pre>
>><a onClick="window.open('getRecord.php?id=b10861',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10861" target=_"blank">b10861</a> NZ_AARN02000031 Listeria monocytogenes FSL J2-0  (552 nt)
 initn: 2724 init1: 2724 opt: 2724  Z-score: 88.3  bits: 26.1 E():   78
banded Smith-Waterman score: 2724; 99.3% identity (99.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b10861 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b10861 GCAGTTCTTGAAAAACCATATATTTTAATTACAGATAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10861 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b10861 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b22755>
<pre>
>><a onClick="window.open('getRecord.php?id=b22755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22755" target=_"blank">b22755</a> HE999704 Listeria monocytogenes La111            (552 nt)
 initn: 2706 init1: 2706 opt: 2706  Z-score: 87.9  bits: 26.1 E():   82
banded Smith-Waterman score: 2706; 98.9% identity (98.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b22755 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b22755 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :: ::::::::::::::::: ::::::::::::::::::::::::::::: :: ::::::
b22755 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b22755 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b22754>
<pre>
>><a onClick="window.open('getRecord.php?id=b22754',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22754" target=_"blank">b22754</a> HE999705 Listeria monocytogenes N53-1            (552 nt)
 initn: 2706 init1: 2706 opt: 2706  Z-score: 87.9  bits: 26.1 E():   82
banded Smith-Waterman score: 2706; 98.9% identity (98.9% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13544 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b22754 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13544 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13544 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13544 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13544 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13544 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
b22754 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13544 GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :: ::::::::::::::::: ::::::::::::::::::::::::::::: :: ::::::
b22754 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13544 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13544 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13544 GTAGTAGCCGTG
       ::::::::::::
b22754 GTAGTAGCCGTG
              550  

</pre>
<hr>
<p><pre>


552 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:41:55 2024 done: Mon Jul 22 02:41:57 2024
 Total Scan time:  2.250 Total Display time:  0.000

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>