/var/www/html/cpndb/fasta_results/b13508.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b13508 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b13508
<pre>
  1>>>b13508 552 nt - 552 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0029;  K=2.031e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.140
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b27682',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27682" target=_"blank">b27682</a> NC_017547 Listeria  monocytogenes  Finl ( 552) [f] 2760 27.0      43 <A HREF="#b27682">align</A>
<a onClick="window.open('getRecord.php?id=b21050',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21050" target=_"blank">b21050</a> NC_018589 Listeria monocytogenes SLCC24 ( 552) [f] 2679 26.7      54 <A HREF="#b21050">align</A>
<a onClick="window.open('getRecord.php?id=b7470',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7470" target=_"blank">b7470</a> AY922347 Listeria monocytogenes serotype ( 552) [f] 2679 26.7      54 <A HREF="#b7470">align</A>
<a onClick="window.open('getRecord.php?id=v1608',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1608" target=_"blank">v1608</a> 817 Listeria monocytogenes M3487         ( 552) [f] 2679 26.7      54 <A HREF="#v1608">align</A>
<a onClick="window.open('getRecord.php?id=b1083',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1083" target=_"blank">b1083</a> AF335323 Listeria monocytogenes LO28     ( 552) [f] 2679 26.7      54 <A HREF="#b1083">align</A>
<a onClick="window.open('getRecord.php?id=b10809',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10809" target=_"blank">b10809</a> NZ_AARM01000324 Listeria monocytogenes  ( 552) [f] 2679 26.7      54 <A HREF="#b10809">align</A>
<a onClick="window.open('getRecord.php?id=b27683',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27683" target=_"blank">b27683</a> NC_017546 Listeria  monocytogenes  FSL  ( 552) [f] 2679 26.7      54 <A HREF="#b27683">align</A>
<a onClick="window.open('getRecord.php?id=b1338',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1338" target=_"blank">b1338</a> NC_003210 Listeria monocytogenes EGD-e   ( 552) [f] 2679 26.7      54 <A HREF="#b1338">align</A>
<a onClick="window.open('getRecord.php?id=b10377',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10377" target=_"blank">b10377</a> NZ_AARX02000002 Listeria monocytogenes  ( 552) [f] 2670 26.6      56 <A HREF="#b10377">align</A>
<a onClick="window.open('getRecord.php?id=b21115',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21115" target=_"blank">b21115</a> NC_018593 Listeria monocytogenes SLCC71 ( 552) [f] 2670 26.6      56 <A HREF="#b21115">align</A>
<a onClick="window.open('getRecord.php?id=b10379',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10379" target=_"blank">b10379</a> CP002001 Listeria monocytogenes J0161   ( 552) [f] 2670 26.6      56 <A HREF="#b10379">align</A>
<a onClick="window.open('getRecord.php?id=b21053',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21053" target=_"blank">b21053</a> NC_018584 Listeria monocytogenes ATCC 1 ( 552) [f] 2652 26.6      59 <A HREF="#b21053">align</A>
<a onClick="window.open('getRecord.php?id=b7473',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7473" target=_"blank">b7473</a> AY922350 Listeria monocytogenes serotype ( 552) [f] 2652 26.6      59 <A HREF="#b7473">align</A>
<a onClick="window.open('getRecord.php?id=b18950',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18950" target=_"blank">b18950</a> CM001159 Listeria monocytogenes Scott A ( 552) [f] 2652 26.6      59 <A HREF="#b18950">align</A>
<a onClick="window.open('getRecord.php?id=b10376',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10376" target=_"blank">b10376</a> NZ_AATL01000031 Listeria monocytogenes  ( 552) [f] 2652 26.6      59 <A HREF="#b10376">align</A>
<a onClick="window.open('getRecord.php?id=b22754',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22754" target=_"blank">b22754</a> HE999705 Listeria monocytogenes N53-1   ( 552) [f] 2643 26.5      60 <A HREF="#b22754">align</A>
<a onClick="window.open('getRecord.php?id=b21051',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21051" target=_"blank">b21051</a> NC_018586 Listeria monocytogenes SLCC25 ( 552) [f] 2643 26.5      60 <A HREF="#b21051">align</A>
<a onClick="window.open('getRecord.php?id=b22755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22755" target=_"blank">b22755</a> HE999704 Listeria monocytogenes La111   ( 552) [f] 2643 26.5      60 <A HREF="#b22755">align</A>
<a onClick="window.open('getRecord.php?id=b7475',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7475" target=_"blank">b7475</a> AY922352 Listeria monocytogenes ATCC 191 ( 552) [f] 2625 26.4      63 <A HREF="#b7475">align</A>
<a onClick="window.open('getRecord.php?id=b19191',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19191" target=_"blank">b19191</a> CP002816 Listeria monocytogenes M7      ( 552) [f] 2625 26.4      63 <A HREF="#b19191">align</A>
</pre><p><hr><p>

>>>b13508, 552 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b27682>
<pre>
>><a onClick="window.open('getRecord.php?id=b27682',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27682" target=_"blank">b27682</a> NC_017547 Listeria  monocytogenes  Finland 1998  (552 nt)
 initn: 2760 init1: 2760 opt: 2760  Z-score: 93.0  bits: 27.0 E():   43
banded Smith-Waterman score: 2760; 100.0% identity (100.0% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27682 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b27682 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21050>
<pre>
>><a onClick="window.open('getRecord.php?id=b21050',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21050" target=_"blank">b21050</a> NC_018589 Listeria monocytogenes SLCC2479        (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21050 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21050 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21050 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b21050 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21050 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21050 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b21050 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b21050 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b21050 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b21050 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b7470>
<pre>
>><a onClick="window.open('getRecord.php?id=b7470',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7470" target=_"blank">b7470</a> AY922347 Listeria monocytogenes serotype1/2c ATC  (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7470  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7470  AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b7470  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b7470  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7470  GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7470  ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b7470  GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b7470  ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b7470  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b7470  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=v1608>
<pre>
>><a onClick="window.open('getRecord.php?id=v1608',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1608" target=_"blank">v1608</a> 817 Listeria monocytogenes M3487                  (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1608  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1608  AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
v1608  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
v1608  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1608  GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1608  ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
v1608  GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
v1608  ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
v1608  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
v1608  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b1083>
<pre>
>><a onClick="window.open('getRecord.php?id=b1083',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1083" target=_"blank">b1083</a> AF335323 Listeria monocytogenes LO28              (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1083  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1083  AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b1083  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b1083  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1083  GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1083  ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b1083  GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b1083  ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b1083  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b1083  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10809>
<pre>
>><a onClick="window.open('getRecord.php?id=b10809',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10809" target=_"blank">b10809</a> NZ_AARM01000324 Listeria monocytogenes FSL J2-0  (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10809 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10809 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10809 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b10809 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10809 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10809 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b10809 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b10809 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b10809 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b10809 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b27683>
<pre>
>><a onClick="window.open('getRecord.php?id=b27683',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27683" target=_"blank">b27683</a> NC_017546 Listeria  monocytogenes  FSL R2-561    (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27683 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27683 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b27683 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b27683 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27683 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27683 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b27683 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b27683 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b27683 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b27683 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b1338>
<pre>
>><a onClick="window.open('getRecord.php?id=b1338',
                                'cpndb_record'); return false;" href="getRecord.php?id=b1338" target=_"blank">b1338</a> NC_003210 Listeria monocytogenes EGD-e            (552 nt)
 initn: 2679 init1: 2679 opt: 2679  Z-score: 91.1  bits: 26.7 E():   54
banded Smith-Waterman score: 2679; 98.4% identity (98.4% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1338  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1338  AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b1338  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b1338  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1338  GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b1338  ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b1338  GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b1338  ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b1338  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b1338  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10377>
<pre>
>><a onClick="window.open('getRecord.php?id=b10377',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10377" target=_"blank">b10377</a> NZ_AARX02000002 Listeria monocytogenes J2818     (552 nt)
 initn: 2670 init1: 2670 opt: 2670  Z-score: 90.9  bits: 26.6 E():   56
banded Smith-Waterman score: 2670; 98.2% identity (98.2% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10377 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10377 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10377 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::: ::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b10377 TCTGGGGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10377 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10377 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b10377 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b10377 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b10377 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b10377 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21115>
<pre>
>><a onClick="window.open('getRecord.php?id=b21115',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21115" target=_"blank">b21115</a> NC_018593 Listeria monocytogenes SLCC7179        (552 nt)
 initn: 2670 init1: 2670 opt: 2670  Z-score: 90.9  bits: 26.6 E():   56
banded Smith-Waterman score: 2670; 98.2% identity (98.2% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21115 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21115 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21115 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::: ::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b21115 TCTGGGGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21115 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21115 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b21115 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b21115 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b21115 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b21115 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10379>
<pre>
>><a onClick="window.open('getRecord.php?id=b10379',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10379" target=_"blank">b10379</a> CP002001 Listeria monocytogenes J0161            (552 nt)
 initn: 2670 init1: 2670 opt: 2670  Z-score: 90.9  bits: 26.6 E():   56
banded Smith-Waterman score: 2670; 98.2% identity (98.2% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10379 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10379 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10379 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::: ::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b10379 TCTGGGGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGCGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10379 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10379 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b10379 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b10379 ATCTTACCAGTTTTAGAACAAGTCGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: :::::::: :::
b10379 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTTAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b10379 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21053>
<pre>
>><a onClick="window.open('getRecord.php?id=b21053',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21053" target=_"blank">b21053</a> NC_018584 Listeria monocytogenes ATCC 19117      (552 nt)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 90.5  bits: 26.6 E():   59
banded Smith-Waterman score: 2652; 97.8% identity (97.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::::::::::
b21053 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21053 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21053 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21053 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b21053 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::: :::::::: :::::::: :: :::::::::
b21053 ATGCAATTCGACCGCGGCTACACTAGCCCATACATGGTGACTGATTCTGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21053 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21053 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b21053 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b21053 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b7473>
<pre>
>><a onClick="window.open('getRecord.php?id=b7473',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7473" target=_"blank">b7473</a> AY922350 Listeria monocytogenes serotype4b ATCC   (552 nt)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 90.5  bits: 26.6 E():   59
banded Smith-Waterman score: 2652; 97.8% identity (97.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::::::::::
b7473  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7473  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b7473  AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7473  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b7473  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::: :::::::: :::::::: :: :::::::::
b7473  ATGCAATTCGACCGCGGCTACACTAGCCCATACATGGTGACTGATTCTGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7473  GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7473  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b7473  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b7473  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b18950>
<pre>
>><a onClick="window.open('getRecord.php?id=b18950',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18950" target=_"blank">b18950</a> CM001159 Listeria monocytogenes Scott A          (552 nt)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 90.5  bits: 26.6 E():   59
banded Smith-Waterman score: 2652; 97.8% identity (97.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::::::::::
b18950 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18950 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b18950 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18950 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b18950 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::: :::::::: :::::::: :: :::::::::
b18950 ATGCAATTCGACCGCGGCTACACTAGCCCATACATGGTGACTGATTCTGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18950 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18950 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b18950 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b18950 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b10376>
<pre>
>><a onClick="window.open('getRecord.php?id=b10376',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10376" target=_"blank">b10376</a> NZ_AATL01000031 Listeria monocytogenes HPB2262   (552 nt)
 initn: 2652 init1: 2652 opt: 2652  Z-score: 90.5  bits: 26.6 E():   59
banded Smith-Waterman score: 2652; 97.8% identity (97.8% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::::::::::
b10376 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10376 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10376 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10376 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b10376 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::: :::::::: :::::::: :: :::::::::
b10376 ATGCAATTCGACCGCGGCTACACTAGCCCATACATGGTGACTGATTCTGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10376 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10376 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b10376 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b10376 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b22754>
<pre>
>><a onClick="window.open('getRecord.php?id=b22754',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22754" target=_"blank">b22754</a> HE999705 Listeria monocytogenes N53-1            (552 nt)
 initn: 2643 init1: 2643 opt: 2643  Z-score: 90.3  bits: 26.5 E():   60
banded Smith-Waterman score: 2643; 97.6% identity (97.6% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b22754 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b22754 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::
b22754 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       :::::::: ::::: :::::::::::::: ::::::::::::::::::::::::::::::
b22754 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b22754 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22754 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b22754 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b22754 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b21051>
<pre>
>><a onClick="window.open('getRecord.php?id=b21051',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21051" target=_"blank">b21051</a> NC_018586 Listeria monocytogenes SLCC2540        (552 nt)
 initn: 2643 init1: 2643 opt: 2643  Z-score: 90.3  bits: 26.5 E():   60
banded Smith-Waterman score: 2643; 97.6% identity (97.6% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b21051 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: ::::::::::: :: ::::::::::::::::::::::::::::::::::::::::::
b21051 AATCCAGTAGGCGTACGTCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b21051 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCAATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21051 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::
b21051 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGACGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       ::::::::::::::::::::::::::::: :::::::: :::::::: :: :::::::::
b21051 ATGCAATTCGACCGCGGCTACACTAGCCCATACATGGTGACTGATTCTGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21051 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21051 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b21051 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b21051 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b22755>
<pre>
>><a onClick="window.open('getRecord.php?id=b22755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b22755" target=_"blank">b22755</a> HE999704 Listeria monocytogenes La111            (552 nt)
 initn: 2643 init1: 2643 opt: 2643  Z-score: 90.3  bits: 26.5 E():   60
banded Smith-Waterman score: 2643; 97.6% identity (97.6% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b22755 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b22755 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::
b22755 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       :::::::: ::::: :::::::::::::: ::::::::::::::::::::::::::::::
b22755 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGATAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :::::::::::::::::::::::::::::::::::::::::::::::::: :: ::::::
b22755 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAATATTCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b22755 ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b22755 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b22755 GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b7475>
<pre>
>><a onClick="window.open('getRecord.php?id=b7475',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7475" target=_"blank">b7475</a> AY922352 Listeria monocytogenes ATCC 19118        (552 nt)
 initn: 2625 init1: 2625 opt: 2625  Z-score: 89.9  bits: 26.4 E():   63
banded Smith-Waterman score: 2625; 97.3% identity (97.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::: ::::: :::::::::::::::
b7475  GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTGAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b7475  TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::
b7475  GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       :::::::: ::::: :::::::::::::: :::::::::::::::::::: :::::::::
b7475  ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :: ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b7475  GCAGTTCTTGAAAAACCATATATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7475  ATCTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b7475  GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b7475  GTAGTAGCCGTG
              550  

</pre>
<hr>
<A name=b19191>
<pre>
>><a onClick="window.open('getRecord.php?id=b19191',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19191" target=_"blank">b19191</a> CP002816 Listeria monocytogenes M7               (552 nt)
 initn: 2625 init1: 2625 opt: 2625  Z-score: 89.9  bits: 26.4 E():   63
banded Smith-Waterman score: 2625; 97.3% identity (97.3% similar) in 552 nt overlap (1-552:1-552)
<p>

               10        20        30        40        50        60
b13508 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAATGTAACAGCTGGAGCA
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b19191 GCTACCGTTTTAGCGCAAGCAATGATTCAAGAAGGCTTAAAAAACGTAACAGCTGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b13508 AACCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 AATCCAGTAGGCGTTCGCCGCGGTATCGAAAAAGCCGTAGCAACAGCTATCGAAGAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b13508 AAAGCTATCTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 AAAGCTATTTCTAAACCAATTGAAAGCAAAGAGTCTATCGCTCAAGTTGCTGCTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b13508 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGAGTTGGTAACGAC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b19191 TCTGGTGATGAAGAAGTTGGTAAATTAATCGCAGAAGCAATGGAACGTGTTGGTAACGAC
              190       200       210       220       230       240

              250       260       270       280       290       300
b13508 GGCGTTATCACTATTGAAGAATCCAAAGGTTTTGCAACAGAATTAGACGTAGTAGAAGGT
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::
b19191 GGCGTTATCACTATTGAAGAATCCAAAGGCTTTGCAACAGAATTAGATGTAGTAGAAGGT
              250       260       270       280       290       300

              310       320       330       340       350       360
b13508 ATGCAATTCGACCGCGGCTACACTAGCCCTTACATGGTAACTGATTCCGATAAAATGGAA
       :::::::: ::::: :::::::::::::: :::::::::::::::::::: :::::::::
b19191 ATGCAATTTGACCGTGGCTACACTAGCCCATACATGGTAACTGATTCCGACAAAATGGAA
              310       320       330       340       350       360

              370       380       390       400       410       420
b13508 GCTGTTCTTGAAAAACCATACATTTTAATTACAGACAAAAAAATCAACAACATCCAAGAA
       :: ::::::::::::::::: :::::::::::::: ::::::::::::::::::::::::
b19191 GCAGTTCTTGAAAAACCATATATTTTAATTACAGATAAAAAAATCAACAACATCCAAGAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b13508 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19191 ATTTTACCAGTTTTAGAACAAGTTGTTCAACAAGGTCGTCCAATGTTAATCATTGCGGAA
              430       440       450       460       470       480

              490       500       510       520       530       540
b13508 GATGTTGAAGGTGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGTGGAACATTCAAC
       ::::::::::: ::::::::::::::::::::::::::::::::::: ::::::::::::
b19191 GATGTTGAAGGGGAAGCTCAAGCAACTCTTGTACTAAACAAACTTCGCGGAACATTCAAC
              490       500       510       520       530       540

              550  
b13508 GTAGTAGCCGTG
       ::::::::::::
b19191 GTAGTAGCCGTG
              550  

</pre>
<hr>
<p><pre>


552 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:41:36 2024 done: Mon Jul 22 02:41:38 2024
 Total Scan time:  2.140 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>