/var/www/html/cpndb/fasta_results/b12828.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b12828 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b12828
<pre>
  1>>>b12828 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0028;  K=1.858e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.320
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b27731',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27731" target=_"blank">b27731</a> NC_018139 Legionella  pneumophila  subs ( 555) [f] 2676 26.3      68 <A HREF="#b27731">align</A>
<a onClick="window.open('getRecord.php?id=b10196',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10196" target=_"blank">b10196</a> NC_009494 Legionella pneumophila str. C ( 555) [f] 2676 26.3      68 <A HREF="#b10196">align</A>
<a onClick="window.open('getRecord.php?id=b6873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6873" target=_"blank">b6873</a> NC_006368 Legionella pneumophila Paris   ( 555) [f] 2676 26.3      68 <A HREF="#b6873">align</A>
<a onClick="window.open('getRecord.php?id=b27843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27843" target=_"blank">b27843</a> AVOV01000008 Legionella  pneumophila  s ( 555) [f] 2676 26.3      68 <A HREF="#b27843">align</A>
<a onClick="window.open('getRecord.php?id=b27844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27844" target=_"blank">b27844</a> AVOW01000055 Legionella  pneumophila  s ( 555) [f] 2676 26.3      68 <A HREF="#b27844">align</A>
<a onClick="window.open('getRecord.php?id=b20453',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20453" target=_"blank">b20453</a> CP003192 Legionella pneumophila subsp.  ( 555) [f] 2667 26.3      70 <A HREF="#b20453">align</A>
<a onClick="window.open('getRecord.php?id=b27730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27730" target=_"blank">b27730</a> NC_018140 Legionella  pneumophila  subs ( 555) [f] 2667 26.3      70 <A HREF="#b27730">align</A>
<a onClick="window.open('getRecord.php?id=b20514',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20514" target=_"blank">b20514</a> NC_016811 Legionella pneumophila subsp. ( 555) [f] 2667 26.3      70 <A HREF="#b20514">align</A>
<a onClick="window.open('getRecord.php?id=b6863',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6863" target=_"blank">b6863</a> NC_002942 Legionella pneumophila subsp.  ( 555) [f] 2631 26.2      77 <A HREF="#b6863">align</A>
<a onClick="window.open('getRecord.php?id=b120',
                                'cpndb_record'); return false;" href="getRecord.php?id=b120" target=_"blank">b120</a> M31918 Legionella pneumophila SVir        ( 555) [f] 2631 26.2      77 <A HREF="#b120">align</A>
<a onClick="window.open('getRecord.php?id=v71',
                                'cpndb_record'); return false;" href="getRecord.php?id=v71" target=_"blank">v71</a> 660 Legionella pneumophila                 ( 555) [f] 2622 26.1      79 <A HREF="#v71">align</A>
<a onClick="window.open('getRecord.php?id=b6872',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6872" target=_"blank">b6872</a> NC_006369 Legionella pneumophila Lens    ( 555) [f] 2622 26.1      79 <A HREF="#b6872">align</A>
<a onClick="window.open('getRecord.php?id=b34829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34829" target=_"blank">b34829</a> NZ_CAAAIM010000011 Legionella  rowbotha ( 555) [f] 2113 24.1 3.2e+02 <A HREF="#b34829">align</A>
<a onClick="window.open('getRecord.php?id=b34826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34826" target=_"blank">b34826</a> NZ_CAAAIQ010000012 Legionella  waltersi ( 555) [f] 2095 24.0 3.3e+02 <A HREF="#b34826">align</A>
<a onClick="window.open('getRecord.php?id=b34824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34824" target=_"blank">b34824</a> NZ_CAAAJG010000017 Legionella  moravica ( 555) [f] 2068 23.9 3.6e+02 <A HREF="#b34824">align</A>
<a onClick="window.open('getRecord.php?id=b33760',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33760" target=_"blank">b33760</a> NZ_UGPA01000001 Legionella  worsleiensi ( 555) [f] 2050 23.9 3.8e+02 <A HREF="#b33760">align</A>
<a onClick="window.open('getRecord.php?id=b33755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33755" target=_"blank">b33755</a> NZ_UGOW01000001 Legionella quateirensis ( 555) [f] 2041 23.8 3.9e+02 <A HREF="#b33755">align</A>
<a onClick="window.open('getRecord.php?id=b34835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34835" target=_"blank">b34835</a> NZ_CAAAIO010000027 Legionella  steigerw ( 555) [f] 2041 23.8 3.9e+02 <A HREF="#b34835">align</A>
<a onClick="window.open('getRecord.php?id=b34825',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34825" target=_"blank">b34825</a> NZ_CAAAIL010000001 Legionella  quateire ( 555) [f] 2041 23.8 3.9e+02 <A HREF="#b34825">align</A>
<a onClick="window.open('getRecord.php?id=b33653',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33653" target=_"blank">b33653</a> UGOH01000001 Legionella  parisiensis  N ( 555) [f] 2023 23.7 4.1e+02 <A HREF="#b33653">align</A>
</pre><p><hr><p>

>>>b12828, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b27731>
<pre>
>><a onClick="window.open('getRecord.php?id=b27731',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27731" target=_"blank">b27731</a> NC_018139 Legionella  pneumophila  subsp. pneum  (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 89.3  bits: 26.3 E():   68
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b27731 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b27731 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27731 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b27731 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27731 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b27731 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b27731 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b10196>
<pre>
>><a onClick="window.open('getRecord.php?id=b10196',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10196" target=_"blank">b10196</a> NC_009494 Legionella pneumophila str. Corby      (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 89.3  bits: 26.3 E():   68
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b10196 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b10196 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b10196 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b10196 GCTAATTCTGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b10196 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b10196 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b10196 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6873>
<pre>
>><a onClick="window.open('getRecord.php?id=b6873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6873" target=_"blank">b6873</a> NC_006368 Legionella pneumophila Paris            (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 89.3  bits: 26.3 E():   68
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b6873  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b6873  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b6873  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b6873  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b6873  GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b6873  GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b6873  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27843>
<pre>
>><a onClick="window.open('getRecord.php?id=b27843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27843" target=_"blank">b27843</a> AVOV01000008 Legionella  pneumophila  str. Leg0  (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 89.3  bits: 26.3 E():   68
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b27843 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b27843 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27843 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b27843 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27843 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b27843 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b27843 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27844>
<pre>
>><a onClick="window.open('getRecord.php?id=b27844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27844" target=_"blank">b27844</a> AVOW01000055 Legionella  pneumophila  str. Leg0  (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 89.3  bits: 26.3 E():   68
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b27844 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b27844 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27844 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b27844 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27844 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b27844 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b27844 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b20453>
<pre>
>><a onClick="window.open('getRecord.php?id=b20453',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20453" target=_"blank">b20453</a> CP003192 Legionella pneumophila subsp. pneumoph  (555 nt)
 initn: 2667 init1: 2667 opt: 2667  Z-score: 89.1  bits: 26.3 E():   70
banded Smith-Waterman score: 2667; 97.8% identity (97.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b20453 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b20453 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b20453 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b20453 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b20453 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b20453 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       ::: :::::::::::
b20453 AAAATATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27730>
<pre>
>><a onClick="window.open('getRecord.php?id=b27730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27730" target=_"blank">b27730</a> NC_018140 Legionella  pneumophila  subsp. pneum  (555 nt)
 initn: 2667 init1: 2667 opt: 2667  Z-score: 89.1  bits: 26.3 E():   70
banded Smith-Waterman score: 2667; 97.8% identity (97.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b27730 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b27730 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27730 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b27730 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b27730 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b27730 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b27730 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b27730 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b20514>
<pre>
>><a onClick="window.open('getRecord.php?id=b20514',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20514" target=_"blank">b20514</a> NC_016811 Legionella pneumophila subsp. pneumop  (555 nt)
 initn: 2667 init1: 2667 opt: 2667  Z-score: 89.1  bits: 26.3 E():   70
banded Smith-Waterman score: 2667; 97.8% identity (97.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b20514 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b20514 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b20514 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b20514 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b20514 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b20514 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       ::: :::::::::::
b20514 AAAATATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6863>
<pre>
>><a onClick="window.open('getRecord.php?id=b6863',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6863" target=_"blank">b6863</a> NC_002942 Legionella pneumophila subsp. pneumoph  (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 88.3  bits: 26.2 E():   77
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b6863  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b6863  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b6863  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b6863  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b6863  GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b6863  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTTATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::: :::::::: ::::::::::::::::: :: 
b6863  GAAATGTTGTCCGTATTGGAAGGTGTTGCCAAATCTGGTCGTCCTTTATTGATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b6863  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b6863  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b120>
<pre>
>><a onClick="window.open('getRecord.php?id=b120',
                                'cpndb_record'); return false;" href="getRecord.php?id=b120" target=_"blank">b120</a> M31918 Legionella pneumophila SVir                 (555 nt)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 88.3  bits: 26.2 E():   77
banded Smith-Waterman score: 2631; 97.1% identity (97.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::: ::::::
b120   GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::::::::::::::::::::::
b120   AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::
b120   CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCCATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b120   GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :::::::::::::::::::::::::::::::: :::::::::::::::: ::::::::::
b120   GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::: 
b120   GAAATGTTGTCCGTATTGGAAGGTGTTGCTAAATCTGGCCGTCCTTTGTTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b120   GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b120   AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=v71>
<pre>
>><a onClick="window.open('getRecord.php?id=v71',
                                'cpndb_record'); return false;" href="getRecord.php?id=v71" target=_"blank">v71</a> 660 Legionella pneumophila                          (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 88.2  bits: 26.1 E():   79
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
v71    GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::: ::::::::::::::::::
v71    AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTGGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
v71    CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
v71    GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::: :: ::::::::::::::::: :::::::::::::::::::::::::::
v71    GAGGGTGTTATCACTGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::: ::::::::::: :::::::: :::::::::::::: ::::: 
v71    GAAATGTTGTCCGTATTAGAAGGTGTTGCCAAATCTGGACGTCCTTTATTGATTATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
v71    AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6872>
<pre>
>><a onClick="window.open('getRecord.php?id=b6872',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6872" target=_"blank">b6872</a> NC_006369 Legionella pneumophila Lens             (555 nt)
 initn: 2622 init1: 2622 opt: 2622  Z-score: 88.2  bits: 26.1 E():   79
banded Smith-Waterman score: 2622; 96.9% identity (96.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b6872  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :::::::::::::::::::::::::: :: :::::::: ::::::::::::::::::
b6872  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTGGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b6872  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: ::::: ::::: :::::::::::::::::::::::::::::::::::::::::::::
b6872  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::: :: ::::::::::::::::: :::::::::::::::::::::::::::
b6872  GAGGGTGTTATCACTGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       ::::::::::::::::: ::::::::::: :::::::: :::::::::::::: ::::: 
b6872  GAAATGTTGTCCGTATTAGAAGGTGTTGCCAAATCTGGACGTCCTTTATTGATTATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::::
b6872  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b34829>
<pre>
>><a onClick="window.open('getRecord.php?id=b34829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34829" target=_"blank">b34829</a> NZ_CAAAIM010000011 Legionella  rowbothamii  LLA  (555 nt)
 initn: 2059 init1: 2059 opt: 2113  Z-score: 77.2  bits: 24.1 E(): 3.2e+02
banded Smith-Waterman score: 2113; 86.8% identity (86.8% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: ::::: ::::: :::::::::::::::::: ::::::: :::::::: :: :::
b34829 GCTACTGTATTAGCTCGCTCTATTCTTGTTGAAGGTAACAAAGCAGTTGCTGCTGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       ::::: :::::::: :::::::::::::: :: :: ::  : :::::::: :: ::::::
b34829 AACCCCATGGATCTGAAACGCGGTATTGATAAAGCGGTTCTGGCAGTTACTAAGAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::: :::::::::::::::::::::::: ::: :: :: ::::::::::: :::::::::
b34829 CAATCTATGTCTAAGCCATGCAAAGACAACAAAGCAATCGCTCAAGTTGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: :: :: :: :::::: :::::::::::   :: ::::::::::::::::::
b34829 GCTAACTCTGACGAAGCAATTGGTTCTATCATTGCTAGCGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :::::::: :: :: :::::::::::::: :: :: :::::  : :: :::::::::
b34829 GAAGGTGTTATCACTGTCGAAGATGGTAATGGATTAGAGAATGAATTATCAGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::: :: ::::::::::::::::::::::::::::: :::::::::
b34829 GGTATGCAATTTGATCGTGGATACATTTCTCCATACTTCATCAACAACCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::: ::: : ::::: ::::::::: : :: :::::::: ::: : :: :: :: :::
b34829 AGCTGCGAATTAGAGCACCCATTCATTCTGTTAGTTGACAAGAAAATCTCTAGCATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: ::::: :: :::::::::::::::::::::::::::::::: :::::::: ::::: 
b34829 GATATGTTATCTGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCATTATTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::: ::::::::::::::::: :: :::::::::::::: :::::::: 
b34829 GAAGATGTTGAAGGTGAAGCTTTAGCTACTCTAGTTGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b34829 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34826>
<pre>
>><a onClick="window.open('getRecord.php?id=b34826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34826" target=_"blank">b34826</a> NZ_CAAAIQ010000012 Legionella  waltersii  2074-  (555 nt)
 initn: 2083 init1: 2083 opt: 2095  Z-score: 76.8  bits: 24.0 E(): 3.3e+02
banded Smith-Waterman score: 2095; 86.5% identity (86.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :::::::: ::::::::::::::::::::::: ::::: :::::::: ::::::
b34826 GCTACTGTATTGGCACGTTCTATTCTTGTTGAAGGTCATAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :::::::::::::: ::::: ::::: ::::: :::::::::::::: :: :: ::: : 
b34826 AACCCAATGGATCTAAAACGTGGTATCGACAAAGCAGTATTAGCAGTCACTAAGAAACTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::: : :::::::::::::::::::::: ::: :: ::::::::::: :: :::::::::
b34826 CAATCCATGTCTAAGCCATGCAAAGACAACAAAGCAATTGCTCAAGTGGGCACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: ::::: ::: :::: :: :::::::::::::::::::: ::::: ::::::
b34826 GCTAACTCTGATGAAGCGGTTGGAGCAATCATTGCTGAAGCAATGGAGAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: :: ::::: :::::::: ::::::::  : ::::::::  : :: :::::::::
b34826 GAAGGCGTCATTACTGTTGAAGACGGTAATGGTCTTGAAAATGAATTGTCGGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::::::::: :: :: :::::::::::::::::::: :::::::: :::::::::
b34826 GGTATGCAATTTGACCGTGGATACATTTCTCCATACTTCATTAACAACCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
          ::::::::::: :: :::::: : ::::::::::: :::::::: :: :: ::::::
b34826 TCTTGTGAACTTGAACACCCATTCGTGTTATTGGTTGATAAAAAAGTATCAAGCATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: :::::::: ::::::::::: ::::: :::::::: ::::: :: ::::::::::: 
b34826 GAGATGTTGTCTGTATTGGAAGGCGTTGCTAAATCTGGTCGTCCATTGTTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::  ::::::::::::: ::::: ::::: :: :::::::::::::: :::::::: 
b34826 GAAGACATTGAAGGCGAAGCCTTAGCAACTCTAGTTGTTAACAACATGCGTGGTATTGTC
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b34826 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34824>
<pre>
>><a onClick="window.open('getRecord.php?id=b34824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34824" target=_"blank">b34824</a> NZ_CAAAJG010000017 Legionella  moravica  316-86  (555 nt)
 initn: 2038 init1: 2038 opt: 2068  Z-score: 76.3  bits: 23.9 E(): 3.6e+02
banded Smith-Waterman score: 2068; 85.9% identity (85.9% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :: :: :: ::::::::::::::::::::  : :::::::::::::::::::::
b34824 GCTACTGTTTTAGCACGTTCTATTCTTGTTGAAGGAAATAAAGCGGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: ::::::::::: ::::::::::: ::::: :::::::: :: ::::: :::: ::::
b34824 AATCCAATGGATCTGAAACGCGGTATAGACAAAGCAGTATTGGCTGTTACTAAAAGATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::::  ::::: ::::: :: ::::: : ::: :: ::::: :::::::: :::::::: 
b34824 CAAGAGATGTCCAAGCCTTGTAAAGATACCAAAGCAATTGCACAAGTTGGTACTATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: :: :: :: :::::: :::: :::::::::::::::::::: ::::: :::
b34824 GCTAACTCTGACGAAGCTATTGGTTCTATTATTGCTGAAGCAATGGAAAAGGTTGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: :: :: :: :::::::: :: :::::  : :: :::::  : ::::::::::::
b34824 GAAGGCGTGATCACTGTTGAAGACGGCAATGGTCTTGAGAATGAATTATCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: :::::::::::::::::::::::::::::::::::::::::::: :: :::::::::
b34824 GGAATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :::::::: ::::::::::::::: : :: :::::::: ::::::::::: ::::::
b34824 ACTTGTGAACTGGAGCATCCATTCATTCTGTTAGTTGACAAGAAAGTTTCCAGCATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: :::::::: ::  : ::::: ::::::::::: ::::::::::::::::: :: :: 
b34824 GACATGTTGTCAGTTCTTGAAGGCGTTGCAAAATCAGGCCGTCCTTTATTGATTATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::: :: ::::::::::: :: ::::::::::::::::: 
b34824 GAAGATGTTGAAGGCGAAGCTTTGGCAACTCTGGTAGTGAATAACATGCGCGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b34824 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b33760>
<pre>
>><a onClick="window.open('getRecord.php?id=b33760',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33760" target=_"blank">b33760</a> NZ_UGPA01000001 Legionella  worsleiensis  NCTC1  (555 nt)
 initn: 2021 init1: 2021 opt: 2050  Z-score: 75.9  bits: 23.9 E(): 3.8e+02
banded Smith-Waterman score: 2050; 85.6% identity (85.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: ::: :::::::::: ::::::::::::::  :::: :: :::::::: ::::::
b33760 GCGACTGTACTGGCTCGTTCCATTCTTGTTGAAGGAAACAAGGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :: :::::: : ::::::::::: ::::: :: ::: : :: :: :: :::::::::
b33760 AATCCTATGGATTTAAAACGCGGTATAGACAAAGCGGTACTGGCTGTAACTAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::::  ::::: ::::::::::::::::  :: :: ::::: :::::::: :: ::::: 
b33760 CAAGAAATGTCCAAGCCATGCAAAGACACTAAAGCAATTGCACAAGTTGGTACGATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :: :: :: :::::: :::: ::::::::::::::::::::::: ::::::
b33760 GCCAACTCTGACGAAGCAATTGGTTCTATTATTGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: ::::::::::::::::: :: :::::  : :::::::: :: ::::::::::::
b33760 GAAGGCGTTATTACCGTTGAAGACGGCAATGGTCTTGAAAATGAACTGTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: :::::::::::::: :: :::::::::::::::::::::::::::::::::::::::
b33760 GGAATGCAATTTGATCGTGGATACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       : ::::::::: :: :::::::::::  : :: :::::::: ::: :::::::::: :::
b33760 ACCTGTGAACTGGAACATCCATTCATCCTGTTAGTTGACAAGAAAATTTCCAGTATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: ::: :::: ::  ::::::::::::: ::::: :: :::::::: ::::: ::::: 
b33760 GACATGCTGTCTGTTCTGGAAGGTGTTGCCAAATCCGGTCGTCCTTTGTTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::: :: :: :::::::::::::: :::::::::::::: :::::::: 
b33760 GAAGATGTTGAAGGAGAGGCGTTAGCTACTCTGGTTGTTAACAACATGCGTGGTATTGTC
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       ::::::::::: :: 
b33760 AAAGTATGTGCGGTT
              550     

</pre>
<hr>
<A name=b33755>
<pre>
>><a onClick="window.open('getRecord.php?id=b33755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33755" target=_"blank">b33755</a> NZ_UGOW01000001 Legionella quateirensis NCTC123  (555 nt)
 initn: 2029 init1: 2029 opt: 2041  Z-score: 75.7  bits: 23.8 E(): 3.9e+02
banded Smith-Waterman score: 2041; 85.4% identity (85.4% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :::::::::::::::::::::::::::::  ::::::: ::::::::::: :::
b33755 GCTACTGTATTGGCTCGTTCTATTCTTGTTGAAGGGAACAAAGCTGTTGCTGCCGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: ::::::::::: ::::::::::: ::::: :: ::::: :: :::::::::::::::
b33755 AATCCAATGGATCTGAAACGCGGTATCGACAAAGCGGTATTGGCTGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::::: ::::: ::::: :::::::: :  :: :: :: :: :::::::: :::::::: 
b33755 CAAGCAATGTCCAAGCCTTGCAAAGATACTAAAGCAATCGCACAAGTTGGTACTATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: :: :: :: :::::: :::: ::::::::::::::::::::::: ::::::
b33755 GCTAACTCTGACGAAGCTATTGGTTCTATTATTGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::: :: :: :::::::: :: :::::  : ::::::::  : :: :::::::::
b33755 GAAGGTGTGATCACTGTTGAAGACGGCAATGGTCTTGAAAATGAATTATCAGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: ::::::::::: :: ::::: :::::::: :::::::::::::: :: :::::::::
b33755 GGGATGCAATTTGACCGTGGTTATATTTCTCCTTACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :::::::: :: :::::::: ::: : :: :::::::: :::::::: :: :: :::
b33755 ACTTGTGAACTGGAACATCCATTTATTCTGTTAGTTGACAAGAAAGTTTCAAGCATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: :::::::: ::: : ::::::::::: ::::: :: ::::: :::::::: :: :: 
b33755 GACATGTTGTCAGTACTTGAAGGTGTTGCTAAATCAGGTCGTCCATTATTGATTATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::: :: ::::::::::::::::::::::: :::::::: 
b33755 GAAGATGTTGAAGGCGAAGCTTTGGCAACTCTGGTAGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b33755 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34835>
<pre>
>><a onClick="window.open('getRecord.php?id=b34835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34835" target=_"blank">b34835</a> NZ_CAAAIO010000027 Legionella  steigerwaltii  S  (555 nt)
 initn: 2023 init1: 2023 opt: 2041  Z-score: 75.7  bits: 23.8 E(): 3.9e+02
banded Smith-Waterman score: 2041; 85.4% identity (85.4% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :::::::::::: : ::: ::::::::::  :::::::  ::::::: ::::::
b34835 GCTACTGTATTGGCTCGTGCGATTGTTGTTGAAGGGTACAAAGCAATTGCTGCGGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :: :::::::: :: :::::::: ::::: :: ::    ::: : ::::::::::: 
b34835 AATCCTATGGATCTGAAGCGCGGTATCGACAAAGCTGTTACTGCAATCACCAAAAAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::: ::::::::::::: ::::::::::  :: :: ::::::::::: :: :::::::::
b34835 CAATCTATGTCTAAGCCTTGCAAAGACAATAAAGCAATTGCTCAAGTAGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: ::::: :: :::::: :::: ::::::   :::::::: ::::: ::::::
b34835 GCTAACTCTGATGAAGCAATTGGTTCTATTATTGCTAGTGCAATGGATAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::::::::: :::::::: ::::::::  : ::::::::  : ::::::::::::
b34835 GAAGGTGTTATTACTGTTGAAGACGGTAATGGGCTTGAAAATGAATTGTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::: :::::::::::::: ::::::::::::::::::::::: :: :::::::::
b34835 GGTATGCAGTTTGATCGCGGTTATATTTCTCCATACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  ::::: :::::::::::::::::: : ::::::::::: ::: : ::::::::::::
b34835 ACTTGTGAGCTTGAGCATCCATTCATTCTGTTGGTTGACAAGAAAATCTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: :::::::: ::::::::::: ::::::::::: :: ::::: :: ::::: ::::: 
b34835 GACATGTTGTCTGTATTGGAAGGGGTTGCAAAATCAGGACGTCCATTGTTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::: ::::::::::::::::: ::::: :: :::::::::::::: :::::::: 
b34835 GAAGATGTCGAAGGCGAAGCTTTAGCAACTCTAGTTGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       ::::::::::: :: 
b34835 AAAGTATGTGCAGTT
              550     

</pre>
<hr>
<A name=b34825>
<pre>
>><a onClick="window.open('getRecord.php?id=b34825',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34825" target=_"blank">b34825</a> NZ_CAAAIL010000001 Legionella  quateirensis  Th  (555 nt)
 initn: 2029 init1: 2029 opt: 2041  Z-score: 75.7  bits: 23.8 E(): 3.9e+02
banded Smith-Waterman score: 2041; 85.4% identity (85.4% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :::::::::::::::::::::::::::::  ::::::: ::::::::::: :::
b34825 GCTACTGTATTGGCTCGTTCTATTCTTGTTGAAGGGAACAAAGCTGTTGCTGCCGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: ::::::::::: ::::::::::: ::::: :: ::::: :: :::::::::::::::
b34825 AATCCAATGGATCTGAAACGCGGTATCGACAAAGCGGTATTGGCTGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::::: ::::: ::::: :::::::: :  :: :: :: :: :::::::: :::::::: 
b34825 CAAGCAATGTCCAAGCCTTGCAAAGATACTAAAGCAATCGCACAAGTTGGTACTATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: :: :: :: :::::: :::: ::::::::::::::::::::::: ::::::
b34825 GCTAACTCTGACGAAGCTATTGGTTCTATTATTGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::: :: :: :::::::: :: :::::  : ::::::::  : :: :::::::::
b34825 GAAGGTGTGATCACTGTTGAAGACGGCAATGGTCTTGAAAATGAATTATCAGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: ::::::::::: :: ::::: :::::::: :::::::::::::: :: :::::::::
b34825 GGGATGCAATTTGACCGTGGTTATATTTCTCCTTACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :::::::: :: :::::::: ::: : :: :::::::: :::::::: :: :: :::
b34825 ACTTGTGAACTGGAACATCCATTTATTCTGTTAGTTGACAAGAAAGTTTCAAGCATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: :::::::: ::: : ::::::::::: ::::: :: ::::: :::::::: :: :: 
b34825 GACATGTTGTCAGTACTTGAAGGTGTTGCTAAATCAGGTCGTCCATTATTGATTATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::: :: ::::::::::::::::::::::: :::::::: 
b34825 GAAGATGTTGAAGGCGAAGCTTTGGCAACTCTGGTAGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b34825 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b33653>
<pre>
>><a onClick="window.open('getRecord.php?id=b33653',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33653" target=_"blank">b33653</a> UGOH01000001 Legionella  parisiensis  NCTC11983  (555 nt)
 initn: 2011 init1: 2011 opt: 2023  Z-score: 75.3  bits: 23.7 E(): 4.1e+02
banded Smith-Waterman score: 2023; 85.0% identity (85.0% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12828 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCGGTTGCTGCCGGTATG
       :: :: :::::::::::: : ::: : ::::::::: :::::::  :::::::::: :::
b33653 GCTACTGTATTGGCTCGTGCGATTGTCGTTGAAGGTTACAAAGCAATTGCTGCCGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12828 AACCCAATGGATCTCAAACGCGGTATTGACAAGGCAGTATTAGCAGTTACCAAAAAATTA
       :: :: :::::::: :::::::: :::::::: :::::    ::: : :: :::::::::
b33653 AATCCTATGGATCTGAAACGCGGCATTGACAAAGCAGTTACTGCAATCACTAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12828 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAGGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::: ::::::::::  :: :: ::::::::::: :: :::::::::
b33653 CAAGCTATGTCTAAGCCTTGCAAAGACAATAAAGCAATTGCTCAAGTAGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12828 GCCAATTCGGATGAGGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: ::::: :: :::::::: :: ::::::   :: ::::: ::::: ::::::
b33653 GCTAACTCTGATGAAGCAATTGGTGCAATTATTGCTAGCGCTATGGATAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12828 GAGGGTGTTATTACCGTTGAAGATGGTAATGGCTTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: :::::::: :::::::: :::::: :  : ::::::::  : ::::::::::::
b33653 GAAGGGGTTATTACTGTTGAAGACGGTAATAGTCTTGAAAATGAATTATCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12828 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: ::::: :::::::: ::::: ::::::::::::::::::::::: ::::::: ::::
b33653 GGGATGCAGTTTGATCGTGGTTATATTTCTCCATACTTCATCAACAATCAGCAAAGCATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12828 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :: :: :::::::: ::::::::: : ::::::::::: ::: : ::::::::::::
b33653 ACTTGCGAGCTTGAGCAACCATTCATTATGTTGGTTGACAAGAAAATCTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12828 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCG
       :: ::: :::: ::::::::::::::::::::::: :: ::::: :: ::::: ::::: 
b33653 GACATGCTGTCTGTATTGGAAGGTGTTGCAAAATCAGGTCGTCCATTGTTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12828 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
       :::::::::::::: ::::::::::: :::::::: :::::::::::::: :::::::: 
b33653 GAAGATGTTGAAGGTGAAGCTTTAGCAACTCTGGTTGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12828 AAAGTATGTGCTGTC
       :::::::::::::: 
b33653 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:12:03 2024 done: Mon Jul 22 02:12:05 2024
 Total Scan time:  2.320 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>