/var/www/html/cpndb/fasta_results/b12789.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b12789 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b12789
<pre>
  1>>>b12789 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0029;  K=2.071e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.310
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b27730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27730" target=_"blank">b27730</a> NC_018140 Legionella  pneumophila  subs ( 555) [f] 2766 27.0      43 <A HREF="#b27730">align</A>
<a onClick="window.open('getRecord.php?id=b27731',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27731" target=_"blank">b27731</a> NC_018139 Legionella  pneumophila  subs ( 555) [f] 2757 27.0      45 <A HREF="#b27731">align</A>
<a onClick="window.open('getRecord.php?id=b27843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27843" target=_"blank">b27843</a> AVOV01000008 Legionella  pneumophila  s ( 555) [f] 2757 27.0      45 <A HREF="#b27843">align</A>
<a onClick="window.open('getRecord.php?id=b6873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6873" target=_"blank">b6873</a> NC_006368 Legionella pneumophila Paris   ( 555) [f] 2757 27.0      45 <A HREF="#b6873">align</A>
<a onClick="window.open('getRecord.php?id=b27844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27844" target=_"blank">b27844</a> AVOW01000055 Legionella  pneumophila  s ( 555) [f] 2757 27.0      45 <A HREF="#b27844">align</A>
<a onClick="window.open('getRecord.php?id=b10196',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10196" target=_"blank">b10196</a> NC_009494 Legionella pneumophila str. C ( 555) [f] 2748 26.9      46 <A HREF="#b10196">align</A>
<a onClick="window.open('getRecord.php?id=b20453',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20453" target=_"blank">b20453</a> CP003192 Legionella pneumophila subsp.  ( 555) [f] 2748 26.9      46 <A HREF="#b20453">align</A>
<a onClick="window.open('getRecord.php?id=b20514',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20514" target=_"blank">b20514</a> NC_016811 Legionella pneumophila subsp. ( 555) [f] 2748 26.9      46 <A HREF="#b20514">align</A>
<a onClick="window.open('getRecord.php?id=b6863',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6863" target=_"blank">b6863</a> NC_002942 Legionella pneumophila subsp.  ( 555) [f] 2730 26.8      48 <A HREF="#b6863">align</A>
<a onClick="window.open('getRecord.php?id=b120',
                                'cpndb_record'); return false;" href="getRecord.php?id=b120" target=_"blank">b120</a> M31918 Legionella pneumophila SVir        ( 555) [f] 2730 26.8      48 <A HREF="#b120">align</A>
<a onClick="window.open('getRecord.php?id=v71',
                                'cpndb_record'); return false;" href="getRecord.php?id=v71" target=_"blank">v71</a> 660 Legionella pneumophila                 ( 555) [f] 2685 26.7      55 <A HREF="#v71">align</A>
<a onClick="window.open('getRecord.php?id=b6872',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6872" target=_"blank">b6872</a> NC_006369 Legionella pneumophila Lens    ( 555) [f] 2685 26.7      55 <A HREF="#b6872">align</A>
<a onClick="window.open('getRecord.php?id=b34829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34829" target=_"blank">b34829</a> NZ_CAAAIM010000011 Legionella  rowbotha ( 555) [f] 2158 24.5 2.5e+02 <A HREF="#b34829">align</A>
<a onClick="window.open('getRecord.php?id=b34826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34826" target=_"blank">b34826</a> NZ_CAAAIQ010000012 Legionella  waltersi ( 555) [f] 2131 24.4 2.7e+02 <A HREF="#b34826">align</A>
<a onClick="window.open('getRecord.php?id=b34824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34824" target=_"blank">b34824</a> NZ_CAAAJG010000017 Legionella  moravica ( 555) [f] 2095 24.2 2.9e+02 <A HREF="#b34824">align</A>
<a onClick="window.open('getRecord.php?id=b34835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34835" target=_"blank">b34835</a> NZ_CAAAIO010000027 Legionella  steigerw ( 555) [f] 2077 24.1 3.1e+02 <A HREF="#b34835">align</A>
<a onClick="window.open('getRecord.php?id=b34832',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34832" target=_"blank">b34832</a> NZ_CAAAIH010000002 Legionella  santicru ( 555) [f] 2077 24.1 3.1e+02 <A HREF="#b34832">align</A>
<a onClick="window.open('getRecord.php?id=b34530',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34530" target=_"blank">b34530</a> NZ_LR134173  Legionella  cherrii NCTC11 ( 555) [f] 2077 24.1 3.1e+02 <A HREF="#b34530">align</A>
<a onClick="window.open('getRecord.php?id=b33760',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33760" target=_"blank">b33760</a> NZ_UGPA01000001 Legionella  worsleiensi ( 555) [f] 2068 24.1 3.2e+02 <A HREF="#b33760">align</A>
<a onClick="window.open('getRecord.php?id=b33755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33755" target=_"blank">b33755</a> NZ_UGOW01000001 Legionella quateirensis ( 555) [f] 2068 24.1 3.2e+02 <A HREF="#b33755">align</A>
</pre><p><hr><p>

>>>b12789, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b27730>
<pre>
>><a onClick="window.open('getRecord.php?id=b27730',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27730" target=_"blank">b27730</a> NC_018140 Legionella  pneumophila  subsp. pneum  (555 nt)
 initn: 2766 init1: 2766 opt: 2766  Z-score: 92.8  bits: 27.0 E():   43
banded Smith-Waterman score: 2766; 99.8% identity (99.8% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27730 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b27730 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b27730 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27731>
<pre>
>><a onClick="window.open('getRecord.php?id=b27731',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27731" target=_"blank">b27731</a> NC_018139 Legionella  pneumophila  subsp. pneum  (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 92.6  bits: 27.0 E():   45
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27731 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b27731 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b27731 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27843>
<pre>
>><a onClick="window.open('getRecord.php?id=b27843',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27843" target=_"blank">b27843</a> AVOV01000008 Legionella  pneumophila  str. Leg0  (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 92.6  bits: 27.0 E():   45
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27843 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b27843 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b27843 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6873>
<pre>
>><a onClick="window.open('getRecord.php?id=b6873',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6873" target=_"blank">b6873</a> NC_006368 Legionella pneumophila Paris            (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 92.6  bits: 27.0 E():   45
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6873  GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b6873  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b6873  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b27844>
<pre>
>><a onClick="window.open('getRecord.php?id=b27844',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27844" target=_"blank">b27844</a> AVOW01000055 Legionella  pneumophila  str. Leg0  (555 nt)
 initn: 2757 init1: 2757 opt: 2757  Z-score: 92.6  bits: 27.0 E():   45
banded Smith-Waterman score: 2757; 99.6% identity (99.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27844 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b27844 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b27844 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b10196>
<pre>
>><a onClick="window.open('getRecord.php?id=b10196',
                                'cpndb_record'); return false;" href="getRecord.php?id=b10196" target=_"blank">b10196</a> NC_009494 Legionella pneumophila str. Corby      (555 nt)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 92.4  bits: 26.9 E():   46
banded Smith-Waterman score: 2748; 99.5% identity (99.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GCTAATTCTGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b10196 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b10196 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b10196 AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b20453>
<pre>
>><a onClick="window.open('getRecord.php?id=b20453',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20453" target=_"blank">b20453</a> CP003192 Legionella pneumophila subsp. pneumoph  (555 nt)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 92.4  bits: 26.9 E():   46
banded Smith-Waterman score: 2748; 99.5% identity (99.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20453 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b20453 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       ::: :::::::::::
b20453 AAAATATGTGCTGTC
              550     

</pre>
<hr>
<A name=b20514>
<pre>
>><a onClick="window.open('getRecord.php?id=b20514',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20514" target=_"blank">b20514</a> NC_016811 Legionella pneumophila subsp. pneumop  (555 nt)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 92.4  bits: 26.9 E():   46
banded Smith-Waterman score: 2748; 99.5% identity (99.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20514 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b20514 GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       ::: :::::::::::
b20514 AAAATATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6863>
<pre>
>><a onClick="window.open('getRecord.php?id=b6863',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6863" target=_"blank">b6863</a> NC_002942 Legionella pneumophila subsp. pneumoph  (555 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 92.0  bits: 26.8 E():   48
banded Smith-Waterman score: 2730; 99.1% identity (99.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b6863  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTTATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6863  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::: :::::::: ::::::::::::::::: :::
b6863  GAAATGTTGTCCGTATTGGAAGGTGTTGCCAAATCTGGTCGTCCTTTATTGATCATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b6863  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b6863  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b120>
<pre>
>><a onClick="window.open('getRecord.php?id=b120',
                                'cpndb_record'); return false;" href="getRecord.php?id=b120" target=_"blank">b120</a> M31918 Legionella pneumophila SVir                 (555 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 92.0  bits: 26.8 E():   48
banded Smith-Waterman score: 2730; 99.1% identity (99.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b120   CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCCATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
b120   GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTATGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b120   AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::::::::::::::: ::::::::::::::::: ::::::::::::
b120   GAAATGTTGTCCGTATTGGAAGGTGTTGCTAAATCTGGCCGTCCTTTGTTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b120   GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTCAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b120   AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=v71>
<pre>
>><a onClick="window.open('getRecord.php?id=v71',
                                'cpndb_record'); return false;" href="getRecord.php?id=v71" target=_"blank">v71</a> 660 Legionella pneumophila                          (555 nt)
 initn: 2685 init1: 2685 opt: 2685  Z-score: 91.0  bits: 26.7 E():   55
banded Smith-Waterman score: 2685; 98.2% identity (98.2% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
v71    GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
v71    AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTGGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::: :: :::::::::::::::::::::::::::::::::::::::::::::
v71    GAGGGTGTTATCACTGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v71    AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::: ::::::::::: :::::::: :::::::::::::: ::::::
v71    GAAATGTTGTCCGTATTAGAAGGTGTTGCCAAATCTGGACGTCCTTTATTGATTATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
v71    GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
v71    AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b6872>
<pre>
>><a onClick="window.open('getRecord.php?id=b6872',
                                'cpndb_record'); return false;" href="getRecord.php?id=b6872" target=_"blank">b6872</a> NC_006369 Legionella pneumophila Lens             (555 nt)
 initn: 2685 init1: 2685 opt: 2685  Z-score: 91.0  bits: 26.7 E():   55
banded Smith-Waterman score: 2685; 98.2% identity (98.2% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
b6872  GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b6872  AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTGGCAGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       ::::::::::: :: :::::::::::::::::::::::::::::::::::::::::::::
b6872  GAGGGTGTTATCACTGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b6872  AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       ::::::::::::::::: ::::::::::: :::::::: :::::::::::::: ::::::
b6872  GAAATGTTGTCCGTATTAGAAGGTGTTGCCAAATCTGGACGTCCTTTATTGATTATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::::::::: :::::::::::::::::::::
b6872  GAAGATGTTGAAGGCGAAGCTTTAGCTACTCTGGTAGTTAACAACATGCGCGGTATTGTA
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::::
b6872  AAAGTATGTGCTGTC
              550     

</pre>
<hr>
<A name=b34829>
<pre>
>><a onClick="window.open('getRecord.php?id=b34829',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34829" target=_"blank">b34829</a> NZ_CAAAIM010000011 Legionella  rowbothamii  LLA  (555 nt)
 initn: 2104 init1: 2104 opt: 2158  Z-score: 79.2  bits: 24.5 E(): 2.5e+02
banded Smith-Waterman score: 2158; 87.7% identity (87.7% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: ::::: ::::: :::::::::::::::::: ::::::::::::::::::: :::
b34829 GCTACTGTATTAGCTCGCTCTATTCTTGTTGAAGGTAACAAAGCAGTTGCTGCTGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       :: :: :::::::: :::::::::::::::::::: ::  : :::::::: :: ::::::
b34829 AACCCCATGGATCTGAAACGCGGTATTGATAAAGCGGTTCTGGCAGTTACTAAGAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::: :::::::::::::::::::::::: :::::: :: ::::::::::: :::::::::
b34829 CAATCTATGTCTAAGCCATGCAAAGACAACAAAGCAATCGCTCAAGTTGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :: ::::: :::::: :::::::::::   :: ::::::::::::::::::
b34829 GCTAACTCTGACGAAGCAATTGGTTCTATCATTGCTAGCGCTATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :::::::: :: :: ::::::::::::::::: :: :::::  : :: :::::::::
b34829 GAAGGTGTTATCACTGTCGAAGATGGTAATGGATTAGAGAATGAATTATCAGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       ::::::::::::::::: :: ::::::::::::::::::::::::::::: :::::::::
b34829 GGTATGCAATTTGATCGTGGATACATTTCTCCATACTTCATCAACAACCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       ::::: ::: : ::::: ::::::::: : :: :::::::: ::: : :: :: :: :::
b34829 AGCTGCGAATTAGAGCACCCATTCATTCTGTTAGTTGACAAGAAAATCTCTAGCATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: ::::: :: :::::::::::::::::::::::::::::::: :::::::: ::::: 
b34829 GATATGTTATCTGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCATTATTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::: ::::::::::: ::::: :: :: ::::::::::: :::::::: 
b34829 GAAGATGTTGAAGGTGAAGCTTTAGCTACTCTAGTTGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::: 
b34829 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34826>
<pre>
>><a onClick="window.open('getRecord.php?id=b34826',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34826" target=_"blank">b34826</a> NZ_CAAAIQ010000012 Legionella  waltersii  2074-  (555 nt)
 initn: 2119 init1: 2119 opt: 2131  Z-score: 78.6  bits: 24.4 E(): 2.7e+02
banded Smith-Waterman score: 2131; 87.2% identity (87.2% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: :::::::: ::::::::::::::::::::::: :::::::::::::::::::::
b34826 GCTACTGTATTGGCACGTTCTATTCTTGTTGAAGGTCATAAAGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       :: ::::::::::: ::::: ::::: :: ::::::::::::::::: :: :: ::: : 
b34826 AACCCAATGGATCTAAAACGTGGTATCGACAAAGCAGTATTAGCAGTCACTAAGAAACTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::: : :::::::::::::::::::::: :::::: ::::::::::: :: :::::::::
b34826 CAATCCATGTCTAAGCCATGCAAAGACAACAAAGCAATTGCTCAAGTGGGCACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: ::::::::: :::: :: :::::::::::::::::::: ::::: ::::::
b34826 GCTAACTCTGATGAAGCGGTTGGAGCAATCATTGCTGAAGCAATGGAGAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: :: ::::: :::::::: ::::::::  : ::::::::  : :: :::::::::
b34826 GAAGGCGTCATTACTGTTGAAGACGGTAATGGTCTTGAAAATGAATTGTCGGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::::::::: :: :: :::::::::::::::::::: :::::::: :::::::::
b34826 GGTATGCAATTTGACCGTGGATACATTTCTCCATACTTCATTAACAACCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
          ::::::::::: :: :::::: : ::::::::::: :::::::: :: :: ::::::
b34826 TCTTGTGAACTTGAACACCCATTCGTGTTATTGGTTGATAAAAAAGTATCAAGCATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: ::::::::::: ::::: :::::::: ::::: :: ::::::::::::
b34826 GAGATGTTGTCTGTATTGGAAGGCGTTGCTAAATCTGGTCGTCCATTGTTGATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::  ::::::::::::: ::::: ::::: :: :: ::::::::::: :::::::: 
b34826 GAAGACATTGAAGGCGAAGCCTTAGCAACTCTAGTTGTTAACAACATGCGTGGTATTGTC
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::: 
b34826 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34824>
<pre>
>><a onClick="window.open('getRecord.php?id=b34824',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34824" target=_"blank">b34824</a> NZ_CAAAJG010000017 Legionella  moravica  316-86  (555 nt)
 initn: 2065 init1: 2065 opt: 2095  Z-score: 77.8  bits: 24.2 E(): 2.9e+02
banded Smith-Waterman score: 2095; 86.5% identity (86.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: :: :: :: ::::::::::::::::::::  : ::::: :::::::: ::::::
b34824 GCTACTGTTTTAGCACGTTCTATTCTTGTTGAAGGAAATAAAGCGGTTGCTGCCGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       :::::::::::::: ::::::::::: :: ::::::::::: :: ::::: :::: ::::
b34824 AATCCAATGGATCTGAAACGCGGTATAGACAAAGCAGTATTGGCTGTTACTAAAAGATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::  ::::: ::::: :: ::::: : :::::: ::::: :::::::: :::::::: 
b34824 CAAGAGATGTCCAAGCCTTGTAAAGATACCAAAGCAATTGCACAAGTTGGTACTATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :: ::::: :::::: :::: :::::::::::::::::::: ::::: :::
b34824 GCTAACTCTGACGAAGCTATTGGTTCTATTATTGCTGAAGCAATGGAAAAGGTTGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: :: :: :: :::::::: :: :::::  : :: :::::  : ::::::::::::
b34824 GAAGGCGTGATCACTGTTGAAGACGGCAATGGTCTTGAGAATGAATTATCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: :::::::::::::::::::::::::::::::::::::::::::: :: :::::::::
b34824 GGAATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :::::::: ::::::::::::::: : :: :::::::: ::::::::::: ::::::
b34824 ACTTGTGAACTGGAGCATCCATTCATTCTGTTAGTTGACAAGAAAGTTTCCAGCATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: ::  : ::::: ::::::::::: ::::::::::::::::: :: :::
b34824 GACATGTTGTCAGTTCTTGAAGGCGTTGCAAAATCAGGCCGTCCTTTATTGATTATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::: :: ::::::::::: :: ::::::::::::::::: 
b34824 GAAGATGTTGAAGGCGAAGCTTTGGCAACTCTGGTAGTGAATAACATGCGCGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::: 
b34824 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34835>
<pre>
>><a onClick="window.open('getRecord.php?id=b34835',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34835" target=_"blank">b34835</a> NZ_CAAAIO010000027 Legionella  steigerwaltii  S  (555 nt)
 initn: 2059 init1: 2059 opt: 2077  Z-score: 77.4  bits: 24.1 E(): 3.1e+02
banded Smith-Waterman score: 2077; 86.1% identity (86.1% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: :::::::::::: : ::: ::::::::::  :::::::: ::::::: ::::::
b34835 GCTACTGTATTGGCTCGTGCGATTGTTGTTGAAGGGTACAAAGCAATTGCTGCGGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::: :::::::: :: :::::::: :: ::::: ::    ::: : ::::::::::: 
b34835 AATCCTATGGATCTGAAGCGCGGTATCGACAAAGCTGTTACTGCAATCACCAAAAAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::: ::::::::::::: ::::::::::  ::::: ::::::::::: :: :::::::::
b34835 CAATCTATGTCTAAGCCTTGCAAAGACAATAAAGCAATTGCTCAAGTAGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :::::::: :::::: :::: ::::::   :::::::: ::::: ::::::
b34835 GCTAACTCTGATGAAGCAATTGGTTCTATTATTGCTAGTGCAATGGATAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::::::::: :::::::: ::::::::  : ::::::::  : ::::::::::::
b34835 GAAGGTGTTATTACTGTTGAAGACGGTAATGGGCTTGAAAATGAATTGTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::: :::::::::::::: ::::::::::::::::::::::: :: :::::::::
b34835 GGTATGCAGTTTGATCGCGGTTATATTTCTCCATACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  ::::: :::::::::::::::::: : ::::::::::: ::: : ::::::::::::
b34835 ACTTGTGAGCTTGAGCATCCATTCATTCTGTTGGTTGACAAGAAAATCTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: ::::::::::: ::::::::::: :: ::::: :: ::::: ::::: 
b34835 GACATGTTGTCTGTATTGGAAGGGGTTGCAAAATCAGGACGTCCATTGTTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::: ::::::::::::::::: ::::: :: :: ::::::::::: :::::::: 
b34835 GAAGATGTCGAAGGCGAAGCTTTAGCAACTCTAGTTGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       ::::::::::: :: 
b34835 AAAGTATGTGCAGTT
              550     

</pre>
<hr>
<A name=b34832>
<pre>
>><a onClick="window.open('getRecord.php?id=b34832',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34832" target=_"blank">b34832</a> NZ_CAAAIH010000002 Legionella  santicrucis  SC-  (555 nt)
 initn: 2065 init1: 2065 opt: 2077  Z-score: 77.4  bits: 24.1 E(): 3.1e+02
banded Smith-Waterman score: 2077; 86.1% identity (86.1% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: :::::::::::: ::::: : ::::::::  : :::::: :::: ::::: :::
b34832 GCTACTGTATTGGCTCGTGCTATTGTGGTTGAAGGCTATAAAGCAATTGCAGCTGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::: :::::: : :: :: ::::::::::::::::: :  ::: : ::::::::::::
b34832 AATCCTATGGATTTGAAGCGTGGTATTGATAAAGCAGTTTCTGCAATCACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::: : ::::::::::: :::::::::: :::::: ::::: ::::: :: :::::::::
b34832 CAAACCATGTCTAAGCCTTGCAAAGACAACAAAGCAATTGCACAAGTAGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :::::::: :::::: : :: ::::::   :::::::: ::::: ::::::
b34832 GCTAACTCTGATGAAGCAATTGGTTCAATTATTGCTAGTGCAATGGATAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::::::::: :::::::: ::::::::::::::::::::  : ::::::::::::
b34832 GAAGGTGTTATTACTGTTGAAGACGGTAATGGATTGGAAAATGAATTATCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: ::::: :::::::: :: :: ::::::::::::::::::::::: :: :::: ::::
b34832 GGGATGCAGTTTGATCGTGGATATATTTCTCCATACTTCATCAACAATCAACAAAGCATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  ::::: :::::::::::::::::: : :: ::::: :: ::: :::: :: ::::::
b34832 ACTTGTGAGCTTGAGCATCCATTCATTCTGTTAGTTGATAAGAAAATTTCTAGCATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: :::::::::::::::::::::::::::::::: :::::::: :: :: 
b34832 GATATGTTGTCTGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCATTATTGATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::: ::::::::::: ::: : ::::: :::::::::::::::::::: 
b34832 GAAGATGTTGAAGGTGAAGCTTTAGCTACTTTAGTAGTTAACAACATGCGCGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::: 
b34832 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<A name=b34530>
<pre>
>><a onClick="window.open('getRecord.php?id=b34530',
                                'cpndb_record'); return false;" href="getRecord.php?id=b34530" target=_"blank">b34530</a> NZ_LR134173  Legionella  cherrii NCTC11976       (555 nt)
 initn: 2042 init1: 2042 opt: 2077  Z-score: 77.4  bits: 24.1 E(): 3.1e+02
banded Smith-Waterman score: 2077; 86.1% identity (86.1% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: ::: :::::::: : ::: ::::::::::  :::: ::: ::::::: ::::::
b34530 GCTACTGTACTGGCTCGTGCGATTGTTGTTGAAGGGTACAAGGCAATTGCTGCGGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::: :::::::: :: :::::::: :: ::::: ::    ::: : ::::::::::: 
b34530 AATCCTATGGATCTGAAGCGCGGTATCGACAAAGCGGTTGCTGCAATCACCAAAAAATTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::: ::::::::::::: ::::::::::  ::::: ::::::::::: :: :::::::::
b34530 CAATCTATGTCTAAGCCTTGCAAAGACAATAAAGCAATTGCTCAAGTAGGTACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :::::::: :::::: :::: ::::::   :::::::: ::::: ::::::
b34530 GCTAACTCTGATGAAGCAATTGGTTCTATTATTGCTAGTGCAATGGATAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::::::::: :::::::: ::::::::: : ::::::::  : ::::::::::::
b34530 GAAGGTGTTATTACTGTTGAAGACGGTAATGGACTTGAAAATGAATTATCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :::::::: :::::::: ::::: ::::::::::::::::::::::: :: :::::::::
b34530 GGTATGCAGTTTGATCGTGGTTATATTTCTCCATACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  ::::: :::::::::::::::::: : ::::::::::: ::: : ::::::::::::
b34530 ACTTGTGAGCTTGAGCATCCATTCATTCTGTTGGTTGACAAGAAAATCTCCAGTATTCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: ::::::::::: ::::::::::: :::::::: :::::::: ::::: 
b34530 GACATGTTGTCTGTATTGGAAGGCGTTGCAAAATCAGGCCGTCCATTATTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::::::::::::::: ::::: :: :: ::::::::::: :::::::: 
b34530 GAAGATGTTGAAGGCGAAGCTTTAGCAACTCTAGTTGTAAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::: :: :: 
b34530 AAAGTATGCGCAGTT
              550     

</pre>
<hr>
<A name=b33760>
<pre>
>><a onClick="window.open('getRecord.php?id=b33760',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33760" target=_"blank">b33760</a> NZ_UGPA01000001 Legionella  worsleiensis  NCTC1  (555 nt)
 initn: 2039 init1: 2039 opt: 2068  Z-score: 77.2  bits: 24.1 E(): 3.2e+02
banded Smith-Waterman score: 2068; 85.9% identity (85.9% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: ::: :::::::::: ::::::::::::::  :::: ::::::::::::::::::
b33760 GCGACTGTACTGGCTCGTTCCATTCTTGTTGAAGGAAACAAGGCAGTTGCTGCTGGTATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       ::::: :::::: : ::::::::::: :: ::::: ::: : :: :: :: :::::::::
b33760 AATCCTATGGATTTAAAACGCGGTATAGACAAAGCGGTACTGGCTGTAACTAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::  ::::: ::::::::::::::::  ::::: ::::: :::::::: :: ::::: 
b33760 CAAGAAATGTCCAAGCCATGCAAAGACACTAAAGCAATTGCACAAGTTGGTACGATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       :: :: :: :: ::::: :::::: :::: ::::::::::::::::::::::: ::::::
b33760 GCCAACTCTGACGAAGCAATTGGTTCTATTATTGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: :: ::::::::::::::::: :: :::::  : :::::::: :: ::::::::::::
b33760 GAAGGCGTTATTACCGTTGAAGACGGCAATGGTCTTGAAAATGAACTGTCTGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: :::::::::::::: :: :::::::::::::::::::::::::::::::::::::::
b33760 GGAATGCAATTTGATCGTGGATACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       : ::::::::: :: :::::::::::  : :: :::::::: ::: :::::::::: :::
b33760 ACCTGTGAACTGGAACATCCATTCATCCTGTTAGTTGACAAGAAAATTTCCAGTATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: ::: :::: ::  ::::::::::::: ::::: :: :::::::: ::::: ::::: 
b33760 GACATGCTGTCTGTTCTGGAAGGTGTTGCCAAATCCGGTCGTCCTTTGTTGATTATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       :::::::::::::: :: :: ::::: :::::::: :: ::::::::::: :::::::: 
b33760 GAAGATGTTGAAGGAGAGGCGTTAGCTACTCTGGTTGTTAACAACATGCGTGGTATTGTC
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       ::::::::::: :: 
b33760 AAAGTATGTGCGGTT
              550     

</pre>
<hr>
<A name=b33755>
<pre>
>><a onClick="window.open('getRecord.php?id=b33755',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33755" target=_"blank">b33755</a> NZ_UGOW01000001 Legionella quateirensis NCTC123  (555 nt)
 initn: 2056 init1: 2056 opt: 2068  Z-score: 77.2  bits: 24.1 E(): 3.2e+02
banded Smith-Waterman score: 2068; 85.9% identity (85.9% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b12789 GCAACAGTATTGGCTCGTTCTATTCTTGTTGAAGGTCACAAAGCAGTTGCTGCTGGTATG
       :: :: :::::::::::::::::::::::::::::  ::::::: :::::::: :: :::
b33755 GCTACTGTATTGGCTCGTTCTATTCTTGTTGAAGGGAACAAAGCTGTTGCTGCCGGCATG
               10        20        30        40        50        60

               70        80        90       100       110       120
b12789 AATCCAATGGATCTCAAACGCGGTATTGATAAAGCAGTATTAGCAGTTACCAAAAAATTA
       :::::::::::::: ::::::::::: :: ::::: ::::: :: :::::::::::::::
b33755 AATCCAATGGATCTGAAACGCGGTATCGACAAAGCGGTATTGGCTGTTACCAAAAAATTA
               70        80        90       100       110       120

              130       140       150       160       170       180
b12789 CAAGCTATGTCTAAGCCATGCAAAGACAGCAAAGCTATTGCTCAAGTTGGAACTATTTCT
       ::::: ::::: ::::: :::::::: :  ::::: :: :: :::::::: :::::::: 
b33755 CAAGCAATGTCCAAGCCTTGCAAAGATACTAAAGCAATCGCACAAGTTGGTACTATTTCA
              130       140       150       160       170       180

              190       200       210       220       230       240
b12789 GCTAATTCCGATGAAGCGATTGGTGCTATCATTGCTGAAGCAATGGAAAAAGTTGGTAAA
       ::::: :: :: ::::: :::::: :::: ::::::::::::::::::::::: ::::::
b33755 GCTAACTCTGACGAAGCTATTGGTTCTATTATTGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12789 GAGGGTGTTATTACCGTTGAAGATGGTAATGGATTGGAAAATGAGCTTTCTGTTGTTGAA
       :: ::::: :: :: :::::::: :: :::::  : ::::::::  : :: :::::::::
b33755 GAAGGTGTGATCACTGTTGAAGACGGCAATGGTCTTGAAAATGAATTATCAGTTGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b12789 GGTATGCAATTTGATCGCGGTTACATTTCTCCATACTTCATCAACAACCAGCAAAACATG
       :: ::::::::::: :: ::::: :::::::: :::::::::::::: :: :::::::::
b33755 GGGATGCAATTTGACCGTGGTTATATTTCTCCTTACTTCATCAACAATCAACAAAACATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12789 AGCTGTGAACTTGAGCATCCATTCATTTTATTGGTTGACAAAAAAGTTTCCAGTATTCGT
       :  :::::::: :: :::::::: ::: : :: :::::::: :::::::: :: :: :::
b33755 ACTTGTGAACTGGAACATCCATTTATTCTGTTAGTTGACAAGAAAGTTTCAAGCATCCGT
              370       380       390       400       410       420

              430       440       450       460       470       480
b12789 GAAATGTTGTCCGTATTGGAAGGTGTTGCAAAATCTGGCCGTCCTTTATTGATCATCGCA
       :: :::::::: ::: : ::::::::::: ::::: :: ::::: :::::::: :: :::
b33755 GACATGTTGTCAGTACTTGAAGGTGTTGCTAAATCAGGTCGTCCATTATTGATTATTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b12789 GAAGATGTTGAAGGCGAAGCTTTAGCCACTCTGGTAGTCAACAACATGCGCGGTATTGTA
       ::::::::::::::::::::::: :: ::::::::::: ::::::::::: :::::::: 
b33755 GAAGATGTTGAAGGCGAAGCTTTGGCAACTCTGGTAGTTAACAACATGCGTGGTATTGTT
              490       500       510       520       530       540

              550     
b12789 AAAGTATGTGCTGTC
       :::::::::::::: 
b33755 AAAGTATGTGCTGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:09:53 2024 done: Mon Jul 22 02:09:56 2024
 Total Scan time:  2.310 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>