/var/www/html/cpndb/fasta_results/b12029.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b12029 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b12029
<pre>
  1>>>b12029 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0048;  K=8.569e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  2.210
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b20622',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20622" target=_"blank">b20622</a> NC_017740 Helicobacter pylori Shi169    ( 555) [f] 2775 32.5    0.92 <A HREF="#b20622">align</A>
<a onClick="window.open('getRecord.php?id=b20621',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20621" target=_"blank">b20621</a> NC_017741 Helicobacter pylori Shi112    ( 555) [f] 2748 32.4     1.1 <A HREF="#b20621">align</A>
<a onClick="window.open('getRecord.php?id=b18422',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18422" target=_"blank">b18422</a> AP011941 Helicobacter pylori F30        ( 555) [f] 2730 32.2     1.1 <A HREF="#b18422">align</A>
<a onClick="window.open('getRecord.php?id=b19490',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19490" target=_"blank">b19490</a> CP002982 Helicobacter pylori Puno135    ( 555) [f] 2730 32.2     1.1 <A HREF="#b19490">align</A>
<a onClick="window.open('getRecord.php?id=b18420',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18420" target=_"blank">b18420</a> AP011945 Helicobacter pylori F57        ( 555) [f] 2721 32.2     1.2 <A HREF="#b18420">align</A>
<a onClick="window.open('getRecord.php?id=b21874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21874" target=_"blank">b21874</a> NC_019563 Helicobacter pylori Aklavik86 ( 555) [f] 2721 32.2     1.2 <A HREF="#b21874">align</A>
<a onClick="window.open('getRecord.php?id=b19491',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19491" target=_"blank">b19491</a> CP002980 Helicobacter pylori Puno120    ( 555) [f] 2721 32.2     1.2 <A HREF="#b19491">align</A>
<a onClick="window.open('getRecord.php?id=b20623',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20623" target=_"blank">b20623</a> NC_017739 Helicobacter pylori Shi417    ( 555) [f] 2712 32.1     1.2 <A HREF="#b20623">align</A>
<a onClick="window.open('getRecord.php?id=b24146',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24146" target=_"blank">b24146</a> NZ_AOTT01000009 Helicobacter pylori CPY ( 555) [f] 2712 32.1     1.2 <A HREF="#b24146">align</A>
<a onClick="window.open('getRecord.php?id=b18423',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18423" target=_"blank">b18423</a> AP011940 Helicobacter pylori F16        ( 555) [f] 2712 32.1     1.2 <A HREF="#b18423">align</A>
<a onClick="window.open('getRecord.php?id=b18421',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18421" target=_"blank">b18421</a> AP011943 Helicobacter pylori F32        ( 555) [f] 2703 32.1     1.3 <A HREF="#b18421">align</A>
<a onClick="window.open('getRecord.php?id=b27747',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27747" target=_"blank">b27747</a> AKHV02000016 Helicobacter  pylori  GC26 ( 555) [f] 2694 32.0     1.4 <A HREF="#b27747">align</A>
<a onClick="window.open('getRecord.php?id=b20740',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20740" target=_"blank">b20740</a> CP003419 Helicobacter pylori XZ274      ( 555) [f] 2694 32.0     1.4 <A HREF="#b20740">align</A>
<a onClick="window.open('getRecord.php?id=b19025',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19025" target=_"blank">b19025</a> CP002605 Helicobacter pylori 83         ( 555) [f] 2694 32.0     1.4 <A HREF="#b19025">align</A>
<a onClick="window.open('getRecord.php?id=b24030',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24030" target=_"blank">b24030</a> AP012600 Helicobacter pylori OK113      ( 555) [f] 2685 31.9     1.4 <A HREF="#b24030">align</A>
<a onClick="window.open('getRecord.php?id=b17439',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17439" target=_"blank">b17439</a> CP002096 Helicobacter pylori 35A        ( 555) [f] 2685 31.9     1.4 <A HREF="#b17439">align</A>
<a onClick="window.open('getRecord.php?id=b21875',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21875" target=_"blank">b21875</a> NC_019560 Helicobacter pylori Aklavik11 ( 555) [f] 2676 31.9     1.5 <A HREF="#b21875">align</A>
<a onClick="window.open('getRecord.php?id=b27694',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27694" target=_"blank">b27694</a> AUSS01000012 Helicobacter  pylori  UM11 ( 555) [f] 2676 31.9     1.5 <A HREF="#b27694">align</A>
<a onClick="window.open('getRecord.php?id=b24029',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24029" target=_"blank">b24029</a> AP012601 Helicobacter pylori OK310      ( 555) [f] 2676 31.9     1.5 <A HREF="#b24029">align</A>
<a onClick="window.open('getRecord.php?id=b21171',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21171" target=_"blank">b21171</a> AMOW01000008    Helicobacter pylori R04 ( 555) [f] 2676 31.9     1.5 <A HREF="#b21171">align</A>
</pre><p><hr><p>

>>>b12029, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b20622>
<pre>
>><a onClick="window.open('getRecord.php?id=b20622',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20622" target=_"blank">b20622</a> NC_017740 Helicobacter pylori Shi169             (555 nt)
 initn: 2775 init1: 2775 opt: 2775  Z-score: 122.9  bits: 32.5 E(): 0.92
banded Smith-Waterman score: 2775; 100.0% identity (100.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20622 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b20622 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b20621>
<pre>
>><a onClick="window.open('getRecord.php?id=b20621',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20621" target=_"blank">b20621</a> NC_017741 Helicobacter pylori Shi112             (555 nt)
 initn: 2748 init1: 2748 opt: 2748  Z-score: 121.8  bits: 32.4 E():  1.1
banded Smith-Waterman score: 2748; 99.5% identity (99.5% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b20621 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
b20621 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAATGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20621 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20621 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b20621 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b18422>
<pre>
>><a onClick="window.open('getRecord.php?id=b18422',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18422" target=_"blank">b18422</a> AP011941 Helicobacter pylori F30                 (555 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 121.2  bits: 32.2 E():  1.1
banded Smith-Waterman score: 2730; 99.1% identity (99.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
b18422 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGAAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b18422 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b18422 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18422 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b18422 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b19490>
<pre>
>><a onClick="window.open('getRecord.php?id=b19490',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19490" target=_"blank">b19490</a> CP002982 Helicobacter pylori Puno135             (555 nt)
 initn: 2730 init1: 2730 opt: 2730  Z-score: 121.2  bits: 32.2 E():  1.1
banded Smith-Waterman score: 2730; 99.1% identity (99.1% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::
b19490 GCAAACTCCGATCACAATATTGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 GACGGCGTAATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b19490 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b19490 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19490 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b19490 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b18420>
<pre>
>><a onClick="window.open('getRecord.php?id=b18420',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18420" target=_"blank">b18420</a> AP011945 Helicobacter pylori F57                 (555 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 120.8  bits: 32.2 E():  1.2
banded Smith-Waterman score: 2721; 98.9% identity (98.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18420 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18420 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b18420 AAAAAAGCGAGCAAAAAAGTAGGTGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b18420 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18420 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::::::::::::::: ::::::::::::
b18420 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAATGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18420 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b18420 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
b18420 GAAGACATTGAGGGCGAAGCTTTAACGACTTTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b18420 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21874>
<pre>
>><a onClick="window.open('getRecord.php?id=b21874',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21874" target=_"blank">b21874</a> NC_019563 Helicobacter pylori Aklavik86          (555 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 120.8  bits: 32.2 E():  1.2
banded Smith-Waterman score: 2721; 98.9% identity (98.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::
b21874 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b21874 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: :::::::::::::::::::::::::: :::::::::::::::::::::
b21874 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGTAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21874 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b21874 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b19491>
<pre>
>><a onClick="window.open('getRecord.php?id=b19491',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19491" target=_"blank">b19491</a> CP002980 Helicobacter pylori Puno120             (555 nt)
 initn: 2721 init1: 2721 opt: 2721  Z-score: 120.8  bits: 32.2 E():  1.2
banded Smith-Waterman score: 2721; 98.9% identity (98.9% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
b19491 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAGTGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::: ::::::
b19491 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAAAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b19491 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19491 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b19491 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b20623>
<pre>
>><a onClick="window.open('getRecord.php?id=b20623',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20623" target=_"blank">b20623</a> NC_017739 Helicobacter pylori Shi417             (555 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 120.5  bits: 32.1 E():  1.2
banded Smith-Waterman score: 2712; 98.7% identity (98.7% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20623 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
b20623 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCACTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
b20623 AAAAAAGCGAGCAAAGAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b20623 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20623 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :: :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b20623 GGGATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20623 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20623 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20623 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       ::::: :::::::::
b20623 AATATTGCAGCGGTT
              550     

</pre>
<hr>
<A name=b24146>
<pre>
>><a onClick="window.open('getRecord.php?id=b24146',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24146" target=_"blank">b24146</a> NZ_AOTT01000009 Helicobacter pylori CPY1662      (555 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 120.5  bits: 32.1 E():  1.2
banded Smith-Waterman score: 2712; 98.7% identity (98.7% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24146 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24146 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24146 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b24146 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
b24146 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGAATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b24146 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24146 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::
b24146 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGAGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
b24146 GAAGACATTGAGGGCGAAGCTTTAACGACTTTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b24146 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b18423>
<pre>
>><a onClick="window.open('getRecord.php?id=b18423',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18423" target=_"blank">b18423</a> AP011940 Helicobacter pylori F16                 (555 nt)
 initn: 2712 init1: 2712 opt: 2712  Z-score: 120.5  bits: 32.1 E():  1.2
banded Smith-Waterman score: 2712; 98.7% identity (98.7% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
b18423 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGAAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18423 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18423 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b18423 GCAAACTCTGATCACAATATTGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
b18423 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATATCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b18423 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
b18423 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAACATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b18423 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18423 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b18423 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b18421>
<pre>
>><a onClick="window.open('getRecord.php?id=b18421',
                                'cpndb_record'); return false;" href="getRecord.php?id=b18421" target=_"blank">b18421</a> AP011943 Helicobacter pylori F32                 (555 nt)
 initn: 2703 init1: 2703 opt: 2703  Z-score: 120.2  bits: 32.1 E():  1.3
banded Smith-Waterman score: 2703; 98.6% identity (98.6% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::::::::: :: :::::::::::::::
b18421 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGAAACATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b18421 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
b18421 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b18421 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b18421 GACGGCGTAATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18421 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18421 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::: ::::::::::::::::::::::::
b18421 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAAGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b18421 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b18421 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b27747>
<pre>
>><a onClick="window.open('getRecord.php?id=b27747',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27747" target=_"blank">b27747</a> AKHV02000016 Helicobacter  pylori  GC26          (555 nt)
 initn: 2694 init1: 2694 opt: 2694  Z-score: 119.8  bits: 32.0 E():  1.4
banded Smith-Waterman score: 2694; 98.4% identity (98.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::: :::::::: :::::::::::::::::::::::::::
b27747 GCGACCGTGCTTGCTTATAGCATCTTTAAAGAAGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27747 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27747 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b27747 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27747 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b27747 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27747 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       :::::::::::: : ::::::::::::::::::::::: :::::::::::::::::::::
b27747 GACATTCTCCCATTGCTAGAAAAAACCATGAAAGAGGGAAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b27747 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTA
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b27747 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b20740>
<pre>
>><a onClick="window.open('getRecord.php?id=b20740',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20740" target=_"blank">b20740</a> CP003419 Helicobacter pylori XZ274               (555 nt)
 initn: 2694 init1: 2694 opt: 2694  Z-score: 119.8  bits: 32.0 E():  1.4
banded Smith-Waterman score: 2694; 98.4% identity (98.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b20740 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b20740 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCAATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20740 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::::::::::::::::::::::::::::::::::::::: :::
b20740 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b20740 GACGGCGTGATCACTGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b20740 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20740 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: :::::::::::::::::::::::::::::::: :::::::::::::::
b20740 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCACTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20740 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b20740 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b19025>
<pre>
>><a onClick="window.open('getRecord.php?id=b19025',
                                'cpndb_record'); return false;" href="getRecord.php?id=b19025" target=_"blank">b19025</a> CP002605 Helicobacter pylori 83                  (555 nt)
 initn: 2694 init1: 2694 opt: 2694  Z-score: 119.8  bits: 32.0 E():  1.4
banded Smith-Waterman score: 2694; 98.4% identity (98.4% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::: :::::::: :::::::::::::::::::::::::::
b19025 GCGACCGTGCTTGCTTATAGCATCTTTAAAGAAGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b19025 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19025 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b19025 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19025 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b19025 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19025 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::: : ::::::::::::::::::::::::::::::::::::::::::
b19025 GACATTCTCCCGCTATTGGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b19025 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b19025 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b24030>
<pre>
>><a onClick="window.open('getRecord.php?id=b24030',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24030" target=_"blank">b24030</a> AP012600 Helicobacter pylori OK113               (555 nt)
 initn: 2685 init1: 2685 opt: 2685  Z-score: 119.5  bits: 31.9 E():  1.4
banded Smith-Waterman score: 2685; 98.2% identity (98.2% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b24030 GCGACCGTGCTTGCTTATAGCATCTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::: ::::::::::: :: ::::::::::::
b24030 AACCCTATTGAAGTGAAACGAGGCATGGATAAGGCCGCTGAAGCGATCATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24030 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b24030 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24030 GATGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b24030 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24030 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b24030 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b24030 GAAGACATTGAGGGTGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b24030 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b17439>
<pre>
>><a onClick="window.open('getRecord.php?id=b17439',
                                'cpndb_record'); return false;" href="getRecord.php?id=b17439" target=_"blank">b17439</a> CP002096 Helicobacter pylori 35A                 (555 nt)
 initn: 2685 init1: 2685 opt: 2685  Z-score: 119.5  bits: 31.9 E():  1.4
banded Smith-Waterman score: 2685; 98.2% identity (98.2% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       :::::::::::::::::::::::::::::::: :::::::: :::::::: :::::::::
b17439 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAAGGCTTGAGAAATATCACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
b17439 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAGGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17439 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b17439 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17439 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: ::::::::::::::::::::::::
b17439 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b17439 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::: ::::::::::::::::::::::::
b17439 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAAGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
b17439 GAAGACATTGAGGGCGAAGCTTTAACGACTTTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b17439 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21875>
<pre>
>><a onClick="window.open('getRecord.php?id=b21875',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21875" target=_"blank">b21875</a> NC_019560 Helicobacter pylori Aklavik117         (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 119.2  bits: 31.9 E():  1.5
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
b21875 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21875 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21875 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: ::::::::::: :::::::::::::::::::::::::::::::::::::::
b21875 GCAAACTCCGATCACAATATTGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::::::::::::::::::::: ::::: ::::: ::::::
b21875 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGACGAATTGGATGTTGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::::::::: :::::::: :::::::::::::::
b21875 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTACTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21875 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: :::::::::::::::::::::::: :::::::::::::::::::::::
b21875 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGAGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21875 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b21875 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b27694>
<pre>
>><a onClick="window.open('getRecord.php?id=b27694',
                                'cpndb_record'); return false;" href="getRecord.php?id=b27694" target=_"blank">b27694</a> AUSS01000012 Helicobacter  pylori  UM114         (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 119.2  bits: 31.9 E():  1.5
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::: :::::::::::::::::::: :: :::::::::::::: :::::::::
b27694 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b27694 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27694 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::
b27694 GCAAACTCCGACCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::
b27694 GACGGCGTGATCACCGTTGAAGAAGCCAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: :::::::::::::::::::: :::::::::::::::
b27694 GGCATGCAATTTGATAGAGGCTACCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27694 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b27694 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b27694 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b27694 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b24029>
<pre>
>><a onClick="window.open('getRecord.php?id=b24029',
                                'cpndb_record'); return false;" href="getRecord.php?id=b24029" target=_"blank">b24029</a> AP012601 Helicobacter pylori OK310               (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 119.2  bits: 31.9 E():  1.5
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       :::::::::::::::::::::::::::::::: :: ::::::::::::::::::::::::
b24029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAAGGTTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       :::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
b24029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATTACCCAAGTAGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b24029 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
b24029 GACGGCGTGATCACTGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       ::::::::::::::::::::::: ::::: ::::: ::::::::::::::::::::::::
b24029 GGCATGCAATTTGATAGAGGCTACCTCTCTCCTTACTTTGTAACAAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b24029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       :::::::: :: ::::::::::::::::::::::::::::::::::::::::::::::::
b24029 GACATTCTTCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
b24029 GAAGACATTGAGGGCGAAGCTTTAACGACTTTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b24029 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<A name=b21171>
<pre>
>><a onClick="window.open('getRecord.php?id=b21171',
                                'cpndb_record'); return false;" href="getRecord.php?id=b21171" target=_"blank">b21171</a> AMOW01000008    Helicobacter pylori R046Wa       (555 nt)
 initn: 2676 init1: 2676 opt: 2676  Z-score: 119.2  bits: 31.9 E():  1.5
banded Smith-Waterman score: 2676; 98.0% identity (98.0% similar) in 555 nt overlap (1-555:1-555)
<p>

               10        20        30        40        50        60
b12029 GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21171 GCGACCGTGCTGGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b12029 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
       :::::::::::::::::::::::::::::::::::::::::::: :: :: :::::::::
b21171 AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCGATCATCAATGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b12029 AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
       :::::::::::::::::::: :::::::::::::::::::::::::: ::::::::::::
b21171 AAAAAAGCGAGCAAAAAAGTGGGCGGTAAAGAAGAAATCACCCAAGTGGCGACCATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b12029 GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
       :::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
b21171 GCAAACTCCGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b12029 GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
       ::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::
b21171 GACGGCGTGATCACCGTTGAAGAGGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b12029 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
b21171 GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACCAACGCTGAGAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b12029 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
b21171 ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAG
              370       380       390       400       410       420

              430       440       450       460       470       480
b12029 GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
b21171 GACATTCTCCCGCTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b12029 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b21171 GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
              490       500       510       520       530       540

              550     
b12029 AATATCGCAGCGGTT
       :::::::::::::::
b21171 AATATCGCAGCGGTT
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jul 22 02:01:45 2024 done: Mon Jul 22 02:01:47 2024
 Total Scan time:  2.210 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>