/data/www/cpndb/fasta_results/b10457.fasta# /data/www/cpndb/fasta35 -E 200 -Q -m 6 -b 20 -d 20 -z 2 -H /data/www/cpndb/fasta_results/b10457 /data/www/cpndb/blastDBs/reference_a_nut
<pre>
FASTA searches a protein or DNA sequence data bank
 version 35.03 Feb. 18, 2008
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

</pre>
Query: /data/www/cpndb/fasta_results/b10457
<pre>
  1>>>b10457 555 nt - 555 nt
Library: /data/www/cpndb/blastDBs/reference_a_nut 10433008 residues in 18820 sequences

10433008 residues in 18820 sequences
Statistics: MLE_cen statistics: Lambda= 0.0035;  K=2.82e-05 (cen=941)
Algorithm: FASTA (3.5 Sept 2006) [optimized]
Parameters: +5/-4 matrix (5:-4) ktup: 6
 join: 51, opt: 36, open/ext: -12/-4, width:  16
 Scan time:  1.410
</pre>
<p>
<hr>
<p>
<p><pre>

The best scores are:                                      opt bits E(18820)
<a onClick="window.open('getRecord.php?id=b13510',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13510" target=_"blank">b13510</a> NZ_ABQT01000013 Helicobacter cinaedi CC ( 555) [f] 2743 29.0      11 <A HREF="#b13510">align</A>
<a onClick="window.open('getRecord.php?id=b20649',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20649" target=_"blank">b20649</a> AP012344 Helicobacter cinaedi PAGU611   ( 555) [f] 2743 29.0      11 <A HREF="#b20649">align</A>
<a onClick="window.open('getRecord.php?id=v1065',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1065" target=_"blank">v1065</a> 2550 Helicobacter cinaedi CCUG19503 S168 ( 555) [f] 2743 29.0      11 <A HREF="#v1065">align</A>
<a onClick="window.open('getRecord.php?id=b20618',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20618" target=_"blank">b20618</a> NC_017761 Helicobacter cinaedi PAGU611  ( 555) [f] 2743 29.0      11 <A HREF="#b20618">align</A>
<a onClick="window.open('getRecord.php?id=b20658',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20658" target=_"blank">b20658</a> AP012492 Helicobacter cinaedi  ATCC BAA ( 555) [f] 2743 29.0      11 <A HREF="#b20658">align</A>
<a onClick="window.open('getRecord.php?id=b7791',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7791" target=_"blank">b7791</a> AY787941 Helicobacter cinaedi CCUG19504  ( 555) [f] 2734 28.9      11 <A HREF="#b7791">align</A>
<a onClick="window.open('getRecord.php?id=b7779',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7779" target=_"blank">b7779</a> AY789008 Helicobacter sp. 'Mainz' ATCC 5 ( 555) [f] 2734 28.9      11 <A HREF="#b7779">align</A>
<a onClick="window.open('getRecord.php?id=b4852',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4852" target=_"blank">b4852</a> AJ558216 Helicobacter cinaedi CCUG18818  ( 541) [f] 2705 28.8      12 <A HREF="#b4852">align</A>
<a onClick="window.open('getRecord.php?id=b7789',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7789" target=_"blank">b7789</a> AY787943 Helicobacter hepaticus ATCC 514 ( 555) [f] 2005 25.3 1.4e+02 <A HREF="#b7789">align</A>
<a onClick="window.open('getRecord.php?id=b4153',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4153" target=_"blank">b4153</a> NC_004917 Helicobacter hepaticus ATCC 51 ( 555) [f] 2005 25.3 1.4e+02 <A HREF="#b4153">align</A>
<a onClick="window.open('getRecord.php?id=b7948',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7948" target=_"blank">b7948</a> DQ059428 Helicobacter hepaticus ATCC 514 ( 555) [f] 1996 25.2 1.5e+02 <A HREF="#b7948">align</A>
<a onClick="window.open('getRecord.php?id=b31838',
                                'cpndb_record'); return false;" href="getRecord.php?id=b31838" target=_"blank">b31838</a> NZ_FZPP01000029 Helicobacter  marmotae  ( 555) [f] 1951 25.0 1.7e+02 <A HREF="#b31838">align</A>
<a onClick="window.open('getRecord.php?id=b31839',
                                'cpndb_record'); return false;" href="getRecord.php?id=b31839" target=_"blank">b31839</a> NZ_FZPO01000012 Helicobacter  equorum   ( 555) [f] 1897 24.7 2.1e+02 <A HREF="#b31839">align</A>
<a onClick="window.open('getRecord.php?id=b7783',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7783" target=_"blank">b7783</a> AY787949 Helicobacter canis ATCC 51401   ( 555) [f] 1879 24.6 2.2e+02 <A HREF="#b7783">align</A>
<a onClick="window.open('getRecord.php?id=v1473',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1473" target=_"blank">v1473</a> 3055 Helicobacter canis                  ( 555) [f] 1874 24.6 2.3e+02 <A HREF="#v1473">align</A>
<a onClick="window.open('getRecord.php?id=b33696',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33696" target=_"blank">b33696</a> UGID01000001 Helicobacter  fennelliae   ( 555) [f] 1798 24.2   3e+02 <A HREF="#b33696">align</A>
<a onClick="window.open('getRecord.php?id=b7785',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7785" target=_"blank">b7785</a> AY787947 Helicobacter fennelliae ATCC 35 ( 555) [f] 1789 24.2 3.1e+02 <A HREF="#b7785">align</A>
<a onClick="window.open('getRecord.php?id=v28',
                                'cpndb_record'); return false;" href="getRecord.php?id=v28" target=_"blank">v28</a> 1704 Helicobacter cinaedi                  ( 555) [f] 1789 24.2 3.1e+02 <A HREF="#v28">align</A>
<a onClick="window.open('getRecord.php?id=v68',
                                'cpndb_record'); return false;" href="getRecord.php?id=v68" target=_"blank">v68</a> 534 Helicobacter cinaedi ATCC 35683        ( 555) [f] 1789 24.2 3.1e+02 <A HREF="#v68">align</A>
<a onClick="window.open('getRecord.php?id=v29',
                                'cpndb_record'); return false;" href="getRecord.php?id=v29" target=_"blank">v29</a> 1732 Helicobacter fennelliae               ( 555) [f] 1789 24.2 3.1e+02 <A HREF="#v29">align</A>
</pre><p><hr><p>

>>>b10457, 555 nt vs /data/www/cpndb/blastDBs/reference_a_nut library

<A name=b13510>
<pre>
>><a onClick="window.open('getRecord.php?id=b13510',
                                'cpndb_record'); return false;" href="getRecord.php?id=b13510" target=_"blank">b13510</a> NZ_ABQT01000013 Helicobacter cinaedi CCUG 18818  (555 nt)
 initn: 2725 init1: 2725 opt: 2743  Z-score: 103.6  bits: 29.0 E():   11
banded Smith-Waterman score: 2743; 99.5% identity (99.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b13510 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b13510 AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b20649>
<pre>
>><a onClick="window.open('getRecord.php?id=b20649',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20649" target=_"blank">b20649</a> AP012344 Helicobacter cinaedi PAGU611            (555 nt)
 initn: 2725 init1: 2725 opt: 2743  Z-score: 103.6  bits: 29.0 E():   11
banded Smith-Waterman score: 2743; 99.5% identity (99.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20649 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b20649 AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=v1065>
<pre>
>><a onClick="window.open('getRecord.php?id=v1065',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1065" target=_"blank">v1065</a> 2550 Helicobacter cinaedi CCUG19503 S168          (555 nt)
 initn: 2725 init1: 2725 opt: 2743  Z-score: 103.6  bits: 29.0 E():   11
banded Smith-Waterman score: 2743; 99.5% identity (99.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
v1065  GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
v1065  AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b20618>
<pre>
>><a onClick="window.open('getRecord.php?id=b20618',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20618" target=_"blank">b20618</a> NC_017761 Helicobacter cinaedi PAGU611           (555 nt)
 initn: 2725 init1: 2725 opt: 2743  Z-score: 103.6  bits: 29.0 E():   11
banded Smith-Waterman score: 2743; 99.5% identity (99.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20618 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b20618 AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b20658>
<pre>
>><a onClick="window.open('getRecord.php?id=b20658',
                                'cpndb_record'); return false;" href="getRecord.php?id=b20658" target=_"blank">b20658</a> AP012492 Helicobacter cinaedi  ATCC BAA-847      (555 nt)
 initn: 2725 init1: 2725 opt: 2743  Z-score: 103.6  bits: 29.0 E():   11
banded Smith-Waterman score: 2743; 99.5% identity (99.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b20658 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b20658 AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b7791>
<pre>
>><a onClick="window.open('getRecord.php?id=b7791',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7791" target=_"blank">b7791</a> AY787941 Helicobacter cinaedi CCUG19504           (555 nt)
 initn: 2716 init1: 2716 opt: 2734  Z-score: 103.4  bits: 28.9 E():   11
banded Smith-Waterman score: 2734; 99.3% identity (99.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
b7791  ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAGTCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7791  GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b7791  AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b7779>
<pre>
>><a onClick="window.open('getRecord.php?id=b7779',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7779" target=_"blank">b7779</a> AY789008 Helicobacter sp. 'Mainz' ATCC 51800      (555 nt)
 initn: 2716 init1: 2716 opt: 2734  Z-score: 103.4  bits: 28.9 E():   11
banded Smith-Waterman score: 2734; 99.3% identity (99.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GCAACCGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
b7779  ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAGTCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b7779  GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::::::::: :: 
b7779  AATGTATCAGCAGTT
              550     

</pre>
<hr>
<A name=b4852>
<pre>
>><a onClick="window.open('getRecord.php?id=b4852',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4852" target=_"blank">b4852</a> AJ558216 Helicobacter cinaedi CCUG18818           (541 nt)
 initn: 2705 init1: 2705 opt: 2705  Z-score: 102.8  bits: 28.8 E():   12
banded Smith-Waterman score: 2705; 100.0% identity (100.0% similar) in 541 nt overlap (9-549:1-541)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
               ::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852          GCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
                       10        20        30        40        50  

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
             60        70        80        90       100       110  

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
            120       130       140       150       160       170  

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
            180       190       200       210       220       230  

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
            240       250       260       270       280       290  

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
            300       310       320       330       340       350  

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
            360       370       380       390       400       410  

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
            420       430       440       450       460       470  

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
b4852  GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
            480       490       500       510       520       530  

              550     
b10457 AATGTATCAGCCGTC
       :::::::::      
b4852  AATGTATCA      
            540       

</pre>
<hr>
<A name=b7789>
<pre>
>><a onClick="window.open('getRecord.php?id=b7789',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7789" target=_"blank">b7789</a> AY787943 Helicobacter hepaticus ATCC 51448        (555 nt)
 initn: 1878 init1: 1878 opt: 2005  Z-score: 83.4  bits: 25.3 E(): 1.4e+02
banded Smith-Waterman score: 2005; 84.7% identity (84.7% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: :: ::::: :: :::::::: :: :: :: :::::::::::::: :: :: :: 
b7789  GCAACCGTTCTTGCTTATAGCATTTATAAGGAAGGATTAAGAAATATTACTGCAGGTGCG
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::  :::::::: ::::::::::: ::    :: :: :::::::: ::::: 
b7789  AATCCTATTGAAGTAAAACGTGGTATGGATAAAGCAAGTGCAGCAATTATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    :: :::::: ::::::::::::: :: :: :::::::: :: :: :: :: 
b7789  AAAAAATCAAGTAAAAAAATTGGTGGCAAAAGTGATATTGCACAAGTTGCAACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :::::::::::::::::::: ::  :: : :: :: ::::::::::::::::: :: :::
b7789  GCAAACTCTGATGAAAACATCGGAGCATTAATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       :::::::: :: :: ::::: ::::: :: ::::::::::::::::::::::: ::::::
b7789  GATGGTGTTATTACCGTTGAGGAAGCAAAAGGTATTAATGATGAGCTAAGTGTAGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :::::::: :::::::: ::::::::::: :: ::::::::::::::::: :::::::::
b7789  GGTATGCAATTTGATAGAGGCTATCTTTCTGCGTATTTTGTAACAAATACTGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :::::::::::::::::::: ::::::::::: :::::::: ::::: ::::::::::::
b7789  ACAGCACAGCTTGAAAATGCTTATGTGCTTTTGACAGATAAGAAAATTTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::: :::::::: :: :::::::::::::::::::: ::: : :::::::::
b7789  GAGATTTTGCCATTGCTTGAGGCAACTATGCAAAGTGGCAAACCGCTTTTAATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::: :: ::  : ::::: ::::: :: :::::: : ::::: ::::: 
b7789  GAAGATATTGAGGGTGAGGCTTTGACAACATTGGTTGTGAATAAATTGCGTGGAGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::: :: :: :: 
b7789  AATGTTTCTGCTGTT
              550     

</pre>
<hr>
<A name=b4153>
<pre>
>><a onClick="window.open('getRecord.php?id=b4153',
                                'cpndb_record'); return false;" href="getRecord.php?id=b4153" target=_"blank">b4153</a> NC_004917 Helicobacter hepaticus ATCC 51449       (555 nt)
 initn: 1878 init1: 1878 opt: 2005  Z-score: 83.4  bits: 25.3 E(): 1.4e+02
banded Smith-Waterman score: 2005; 84.7% identity (84.7% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: :: ::::: :: :::::::: :: :: :: :::::::::::::: :: :: :: 
b4153  GCAACCGTTCTTGCTTATAGCATTTATAAGGAAGGATTAAGAAATATTACTGCAGGTGCG
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::  :::::::: ::::::::::: ::    :: :: :::::::: ::::: 
b4153  AATCCTATTGAAGTAAAACGTGGTATGGATAAAGCAAGTGCAGCAATTATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    :: :::::: ::::::::::::: :: :: :::::::: :: :: :: :: 
b4153  AAAAAATCAAGTAAAAAAATTGGTGGCAAAAGTGATATTGCACAAGTTGCAACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :::::::::::::::::::: ::  :: : :: :: ::::::::::::::::: :: :::
b4153  GCAAACTCTGATGAAAACATCGGAGCATTAATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       :::::::: :: :: ::::: ::::: :: ::::::::::::::::::::::: ::::::
b4153  GATGGTGTTATTACCGTTGAGGAAGCAAAAGGTATTAATGATGAGCTAAGTGTAGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :::::::: :::::::: ::::::::::: :: ::::::::::::::::: :::::::::
b4153  GGTATGCAATTTGATAGAGGCTATCTTTCTGCGTATTTTGTAACAAATACTGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :::::::::::::::::::: ::::::::::: :::::::: ::::: ::::::::::::
b4153  ACAGCACAGCTTGAAAATGCTTATGTGCTTTTGACAGATAAGAAAATTTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::: :::::::: :: :::::::::::::::::::: ::: : :::::::::
b4153  GAGATTTTGCCATTGCTTGAGGCAACTATGCAAAGTGGCAAACCGCTTTTAATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::: :: ::  : ::::: ::::: :: :::::: : ::::: ::::: 
b4153  GAAGATATTGAGGGTGAGGCTTTGACAACATTGGTTGTGAATAAATTGCGTGGAGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::: :: :: :: 
b4153  AATGTTTCTGCTGTT
              550     

</pre>
<hr>
<A name=b7948>
<pre>
>><a onClick="window.open('getRecord.php?id=b7948',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7948" target=_"blank">b7948</a> DQ059428 Helicobacter hepaticus ATCC 51448        (555 nt)
 initn: 1869 init1: 1869 opt: 1996  Z-score: 83.2  bits: 25.2 E(): 1.5e+02
banded Smith-Waterman score: 1996; 84.5% identity (84.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: :: ::::: :: :::::::: :: :: :: :::::::::::::: :: :: :: 
b7948  GCAACCGTTCTTGCTTATAGCATTTATAAGGAAGGATTAAGAAATATTACTGCAGGTGCG
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       ::::::::::  :::::::: ::::::::::: ::    :: :: :::::::: ::::: 
b7948  AATCCTATTGAAGTAAAACGTGGTATGGATAAAGCAAGTGCAGCAATTATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    :: :::::: ::::::::::::: :: :: :::::::: :: :: :: :: 
b7948  AAAAAATCAAGTAAAAAAATTGGTGGCAAAAGTGATATTGCACAAGTTGCAACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :::::::::::::::::::: ::  :: : :: :: ::::::::::::::::: :: :::
b7948  GCAAACTCTGATGAAAACATCGGAGCATTAATTGCTGAAGCAATGGAAAAAGTTGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       :::::::: :: :: ::::: ::::: :: ::::::::::::::::::::::: ::::::
b7948  GATGGTGTTATTACCGTTGAGGAAGCAAAAGGTATTAATGATGAGCTAAGTGTAGTTGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :::::::: :::::::: ::::::::::: :: ::::::::::::::::: :::::::::
b7948  GGTATGCAATTTGATAGAGGCTATCTTTCTGCGTATTTTGTAACAAATACTGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::::: :::::::::::::: ::::::::::: :::::::: ::::: ::::::::::::
b7948  ACAGCCCAGCTTGAAAATGCTTATGTGCTTTTGACAGATAAGAAAATTTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::: :::::::: :: :::::::::::::::::::: ::: : :::::::::
b7948  GAGATTTTGCCATTGCTTGAGGCAACTATGCAAAGTGGCAAACCGCTTTTAATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::: :: ::  : ::::: ::::: :: :::::: : ::::: ::::: 
b7948  GAAGATATTGAGGGTGAGGCTTTGACAACATTGGTTGTGAATAAATTGCGTGGAGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::: :: :: :: 
b7948  AATGTTTCTGCTGTT
              550     

</pre>
<hr>
<A name=b31838>
<pre>
>><a onClick="window.open('getRecord.php?id=b31838',
                                'cpndb_record'); return false;" href="getRecord.php?id=b31838" target=_"blank">b31838</a> NZ_FZPP01000029 Helicobacter  marmotae           (555 nt)
 initn: 1900 init1: 1900 opt: 1951  Z-score: 82.0  bits: 25.0 E(): 1.7e+02
banded Smith-Waterman score: 1951; 83.6% identity (83.6% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: :: :: :::::::::::::: ::::: ::::::::::: :: ::::: :: :: 
b31838 GCTACTGTTCTCGCATACAGCATTTATAAAGAAGGTTTAAGAAACATCACAGCAGGAGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::: :  :: ::::: :::::::: ::::: ::  : :: :: ::::: ::::: 
b31838 AATCCTATCGAAGTTAAACGTGGTATGGACAAGGCAGTATCAGCTATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::   :: ::::::::::: :: :: :: :: :: :::::::::::::: :: :: 
b31838 AAAAAGGCAAGTAAAAAAGTTGGCGGGAAGAGTGATATTGCACAAGTAGCGACTATTTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::::::::::::::: :: ::  : ::::: :: ::::: ::::::::::: :: :::
b31838 GCAAACTCTGATGAAAATATCGGTGCGCTTATTGCCGAAGCTATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: :: :: :::::::: :: :::::::: ::::::::  : ::::: :: :: 
b31838 GATGGCGTGATTACCGTTGAAGAGGCAAAGGGTATCAATGATGAATTGAGTGTGGTCGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :::::::: :::::::: ::::: :: :: :::::::::::::: ::::: :: ::::::
b31838 GGTATGCAATTTGATAGAGGCTACCTCTCTGCATATTTTGTAACTAATACTGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :: :: :::::::::::::::::::: :::::::: ::::: ::::::::::::::::::
b31838 ACCGCCCAGCTTGAAAATGCCTATGTACTTTTAACTGATAAGAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::: :: ::::::::::::::::::::::::::::::::: : :: ::::::
b31838 GAGATTTTGCCCTTACTTGAAGCGACTATGCAAAGTGGCAAACCACTTTTAATTATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::: :: :: ::::::::  : :: :: :::::: : ::::::::::::
b31838 GAAGATATTGAGGGTGAGGCTCTTACAACGCTTGTGGTTAATAAATTGCGTGGTGTGCTG
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::: ::::: :: 
b31838 AATGTGTCAGCGGTT
              550     

</pre>
<hr>
<A name=b31839>
<pre>
>><a onClick="window.open('getRecord.php?id=b31839',
                                'cpndb_record'); return false;" href="getRecord.php?id=b31839" target=_"blank">b31839</a> NZ_FZPO01000012 Helicobacter  equorum            (555 nt)
 initn: 1774 init1: 1774 opt: 1897  Z-score: 80.5  bits: 24.7 E(): 2.1e+02
banded Smith-Waterman score: 1897; 82.5% identity (82.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : ::: : :: ::::  ::::: :: ::: : :::::::: :: :: :: 
b31839 GCAACCGTTTTAGCACATAGTATTTTTAAAGAAGGCTTACGTAATATTACTGCAGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::: :::  :::::::::::::::::::::::    :  :: ::::: :: ::::: 
b31839 AATCCTGTTGAGGTAAAACGCGGTATGGATAAGGCTAGTGAAGCAATTATCGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    :::::::::::::: :: :::   :: :::::::::::::: :: :: :: 
b31839 AAAAAAGGAAGCAAAAAAGTTGGCGGTAAAGATGAAATCGCACAAGTAGCAACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       ::::: :::::::: :: :::::    ::::: :: :: :: ::::::::::: :: :::
b31839 GCAAATTCTGATGATAAGATTGGTAGTCTTATTGCTGAGGCTATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: :::::::::::::: :::::::::::::: :: : ::: ::::: 
b31839 GATGGCGTGATCACCGTTGAAGAAGCTAAAGGTATTAATGATGAACTTAATGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :::::::: ::::: :: :: :: ::::: :::::::::::::: ::::: :::::::::
b31839 GGTATGCAATTTGACAGAGGATACCTTTCTGCATATTTTGTAACTAATACTGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :  :::::::::::::: :: ::::::::::: ::::: :::::::::::::::::::::
b31839 ATTGCACAGCTTGAAAACGCGTATGTGCTTTTGACAGACAAAAAAATCTCAAATATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       ::::::::::::::::::::::: :: ::::::::::: :: ::::::::::::::::::
b31839 GAGATTTTGCCTTTGCTTGAAGCTACCATGCAAAGTGGTAAGCCACTTCTTATCATTGCT
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :::::::::::::: :: :: :: :::::::: ::::::::::: 
b31839 GAGGATATTGAAGGTGAAGCACTTACAACATTAGTTGTAAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       ::::: :: :: :: 
b31839 AATGTCTCTGCAGTG
              550     

</pre>
<hr>
<A name=b7783>
<pre>
>><a onClick="window.open('getRecord.php?id=b7783',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7783" target=_"blank">b7783</a> AY787949 Helicobacter canis ATCC 51401            (555 nt)
 initn: 1805 init1: 1805 opt: 1879  Z-score: 80.0  bits: 24.6 E(): 2.2e+02
banded Smith-Waterman score: 1879; 82.1% identity (82.1% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::: ::  :::::::::: ::::::::::::::::: :: :: :::::::: 
b7783  GCCACTGTGCTAGCGCACAGCATTTATAAAGAGGGTTTAAGAAACATCACCGCTGGGGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::: : :  :: :: :::::::::::::::::::  :  ::::::::::: ::::: 
b7783  AATCCTGTGGAAGTTAAGCGCGGTATGGATAAGGCGGCTGAAGCGATTATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::  :::::::::::: :: :::::: :::: ::::: ::::::::::::::::: 
b7783  AAAAAGGCTAGCAAAAAAGTCGGCGGCAAAGGCGAGATCGCCCAAGTAGCGACAATCTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: ::::: ::::: :: :: :::   :: ::::::::::: ::::::::::::::::::
b7783  GCCAACTCCGATGAGAAAATCGGCAACCTAATCGCAGAAGCTATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: :: :::::::::::::: ::::: :::::::::::::: :: :::
b7783  GATGGCGTGATCACCGTGGAAGAAGCTAAGGGGATTAACGATGAGCTAAGTGTGGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::  : :::::  :     ::::::::::::: ::  : :::::::::
b7783  GGTATGCAGTTTGACCGCGGCTACTTAAGCCCATATTTTGTAACCAACGCGGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :     ::::: ::::: :: ::: ::::  : :: :::::::::::::::   ::::::
b7783  AATATCCAGCTAGAAAACGCATATTTGCTACTCACTGATAAAAAAATCTCATCGATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: ::: : ::  ::::::::::::::::: :: ::::::: :: :: :::::::: :: 
b7783  GACATTCTCCCCCTGCTTGAAGCGACTATGAAAGGTGGCAAGCCGCTGCTTATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::::::::: ::::: :::::::: ::::::::: : ::::::::::: 
b7783  GAAGATATTGAGGGCGAAGCTCTTACGACTTTGGTCGTCAATAAATTGCGTGGTGTGCTA
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
b7783  AATGTCGCAGCGGTG
              550     

</pre>
<hr>
<A name=v1473>
<pre>
>><a onClick="window.open('getRecord.php?id=v1473',
                                'cpndb_record'); return false;" href="getRecord.php?id=v1473" target=_"blank">v1473</a> 3055 Helicobacter canis                           (555 nt)
 initn: 1805 init1: 1805 opt: 1874  Z-score: 79.9  bits: 24.6 E(): 2.3e+02
banded Smith-Waterman score: 1874; 82.1% identity (82.1% similar) in 553 nt overlap (1-553:1-553)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::::: ::  :::::::::: ::::::::::::::::: :: :: :::::::: 
v1473  GCCACTGTGCTAGCGCACAGCATTTATAAAGAGGGTTTAAGAAACATCACCGCTGGGGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::: : :  :: :: :::::::::::::::::::  :  ::::::::::: ::::: 
v1473  AATCCTGTGGAAGTTAAGCGCGGTATGGATAAGGCGGCTGAAGCGATTATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       ::::::  :::::::::::: :: :::::: :::: ::::: ::::::::::::::::: 
v1473  AAAAAGGCTAGCAAAAAAGTCGGCGGCAAAGGCGAGATCGCCCAAGTAGCGACAATCTCT
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: ::::: ::::: :: :: :::   :: ::::::::::: ::::::::::::::::::
v1473  GCCAACTCCGATGAGAAAATCGGCAACCTAATCGCAGAAGCTATGGAAAAAGTCGGCAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: :: :::::::::::::: ::::: :::::::::::::: :: :::
v1473  GATGGCGTGATCACCGTGGAAGAAGCTAAGGGGATTAACGATGAGCTAAGTGTGGTAGAG
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       ::::::::::::::  : :::::  :     ::::::::::::: ::  : :::::::::
v1473  GGTATGCAGTTTGACCGCGGCTACTTAAGCCCATATTTTGTAACCAACGCGGATAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       :     ::::: ::::: :: ::: ::::  : :: :::::::::::::::   ::::::
v1473  AATATCCAGCTAGAAAACGCATATTTGCTACTCACTGATAAAAAAATCTCATCGATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: ::: : ::  ::::::::::::::::: :: ::::::: :: :: :::::::: :: 
v1473  GACATTCTCCCCCTGCTTGAAGCGACTATGAAAGGTGGCAAGCCGCTGCTTATCATCGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :::::::::::::::::::: ::::: :::::::: ::::::::: : ::::::::::: 
v1473  GAAGATATTGAGGGCGAAGCTCTTACGACTTTGGTCGTCAATAAATTGCGTGGTGTGCTA
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :  
v1473  AATGTCGCAGCGGCG
              550     

</pre>
<hr>
<A name=b33696>
<pre>
>><a onClick="window.open('getRecord.php?id=b33696',
                                'cpndb_record'); return false;" href="getRecord.php?id=b33696" target=_"blank">b33696</a> UGID01000001 Helicobacter  fennelliae  NCTC1310  (555 nt)
 initn: 1732 init1: 1732 opt: 1798  Z-score: 77.8  bits: 24.2 E(): 3e+02
banded Smith-Waterman score: 1798; 80.5% identity (80.5% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : :: :: ::::::: :::::: :: ::  ::::::: :: ::::: :: 
b33696 GCTACCGTTTTGGCGTATAGCATTTTCAAAGAAGGATTGCGAAATATCACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::::::::::::::: :: :::::::: ::::     ::::: ::::: ::::: 
b33696 AATCCTATTGCCGTAAAACGAGGAATGGATAAAGCGGCAAGCGCGATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    ::::::::::: ::::::::: : :: ::::: ::::: ::::: :: :: 
b33696 AAAAAATCAAGCAAAAAAGTCGGTGGCAAAGGTGAAATCGCTCAAGTTGCGACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: :: ::::::::::: :: ::    :::::::: ::::::::::::::::: :: :::
b33696 GCGAATTCTGATGAAAATATCGGGAATCTTATCGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: ::::: :: :: :: :: :::::::::::  : :: :: ::::: 
b33696 GATGGCGTTATCACCGTTGAGGAGGCAAAAGGGATTAATGATGAATTGAGCGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :: ::::::::::: :: ::::::::     : :::::::::::::::::::: ::::::
b33696 GGAATGCAGTTTGACAGAGGCTATCTCAGCCCTTATTTTGTAACAAATACAGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::: :::::::::::::::: ::: : ::::: ::::: :::::::::::    ::::::
b33696 ACAACACAGCTTGAAAATGCATATATCCTTTTGACAGACAAAAAAATCTCCTCAATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: :::::::: :::::::::::::: ::: :::: :: ::::::::: : ::: :::: 
b33696 GATATTTTGCCATTGCTTGAAGCGACAATGAAAAGCGGGAAACCACTTTTGATCGTTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :: :::::::: :: :: :: ::::::::::: ::::::::::: 
b33696 GAGGATATTGAAGGTGAGGCACTTACGACATTAGTTGTCAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
b33696 AATGTCGCAGCGGTA
              550     

</pre>
<hr>
<A name=b7785>
<pre>
>><a onClick="window.open('getRecord.php?id=b7785',
                                'cpndb_record'); return false;" href="getRecord.php?id=b7785" target=_"blank">b7785</a> AY787947 Helicobacter fennelliae ATCC 35684       (555 nt)
 initn: 1723 init1: 1723 opt: 1789  Z-score: 77.5  bits: 24.2 E(): 3.1e+02
banded Smith-Waterman score: 1789; 80.3% identity (80.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : :: :: ::::::: :::::: :: ::  ::::::: :: ::::: :: 
b7785  GCTACCGTTTTGGCGTATAGCATTTTCAAAGAAGGATTGCGAAATATCACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::::::::::::::: :: :::::::: ::::     ::::: ::::: ::::: 
b7785  AATCCTATTGCCGTAAAACGAGGAATGGATAAAGCGGCAAGCGCGATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    ::::::::::: ::::::::: : :: ::::: ::::: ::::: :: :: 
b7785  AAAAAATCAAGCAAAAAAGTCGGTGGCAAAGGTGAAATCGCTCAAGTTGCGACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: :: ::::::::::: :: ::    :::::::: ::::::::::::::::: :: :::
b7785  GCGAATTCTGATGAAAATATCGGGAATCTTATCGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: ::::: :: :: :: :: :::::::::::  : :: :: ::::: 
b7785  GATGGCGTTATCACCGTTGAGGAGGCAAAAGGGATTAATGATGAATTGAGCGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :: ::::::::::: :: ::::::::     : :::::::::::::::::::: ::::::
b7785  GGAATGCAGTTTGACAGAGGCTATCTCAGCCCTTATTTTGTAACAAATACAGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::: :::::::::::::::: ::: : ::::: ::::: :::::::::::    ::::::
b7785  ACAACACAGCTTGAAAATGCATATATCCTTTTGACAGACAAAAAAATCTCCTCAATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: :::::::: :::::::::::::: ::: :::: :: ::::::::: : ::: :::: 
b7785  GATATTTTGCCATTGCTTGAAGCGACAATGAAAAGCGGGAAACCACTTTTGATCGTTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :: :: ::::: :: :: :: ::::::::::: ::::::::::: 
b7785  GAGGATATTGAAGGTGAGGCGCTTACGACATTAGTTGTCAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
b7785  AATGTCGCAGCGGTA
              550     

</pre>
<hr>
<A name=v28>
<pre>
>><a onClick="window.open('getRecord.php?id=v28',
                                'cpndb_record'); return false;" href="getRecord.php?id=v28" target=_"blank">v28</a> 1704 Helicobacter cinaedi                           (555 nt)
 initn: 1723 init1: 1723 opt: 1789  Z-score: 77.5  bits: 24.2 E(): 3.1e+02
banded Smith-Waterman score: 1789; 80.3% identity (80.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : :: :: ::::::: :::::: :: ::  ::::::: :: ::::: :: 
v28    GCTACCGTTTTGGCGTATAGCATTTTCAAAGAAGGATTGCGAAATATCACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::::::::::::::: :: :::::::: ::::     ::::: ::::: ::::: 
v28    AATCCTATTGCCGTAAAACGAGGAATGGATAAAGCGGCAAGCGCGATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    ::::::::::: ::::::::: : :: ::::: ::::: ::::: :: :: 
v28    AAAAAATCAAGCAAAAAAGTCGGTGGCAAAGGTGAAATCGCTCAAGTTGCGACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: :: ::::::::::: :: ::    :::::::: ::::::::::::::::: :: :::
v28    GCGAATTCTGATGAAAATATCGGGAATCTTATCGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: ::::: :: :: :: :: :::::::::::  : :: :: ::::: 
v28    GATGGCGTTATCACCGTTGAGGAGGCAAAAGGGATTAATGATGAATTGAGCGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :: ::::::::::: :: ::::::::     : :::::::::::::::::::: ::::::
v28    GGAATGCAGTTTGACAGAGGCTATCTCAGCCCTTATTTTGTAACAAATACAGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::: :::::::::::::::: ::: : ::::: ::::: :::::::::::    ::::::
v28    ACAACACAGCTTGAAAATGCATATATCCTTTTGACAGACAAAAAAATCTCCTCAATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: :::::::: :::::::::::::: ::: :::: :: ::::::::: : ::: :::: 
v28    GATATTTTGCCATTGCTTGAAGCGACAATGAAAAGCGGGAAACCACTTTTGATCGTTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :: :: ::::: :: :: :: ::::::::::: ::::::::::: 
v28    GAGGATATTGAAGGTGAGGCGCTTACGACATTAGTTGTCAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
v28    AATGTCGCAGCGGTA
              550     

</pre>
<hr>
<A name=v68>
<pre>
>><a onClick="window.open('getRecord.php?id=v68',
                                'cpndb_record'); return false;" href="getRecord.php?id=v68" target=_"blank">v68</a> 534 Helicobacter cinaedi ATCC 35683                 (555 nt)
 initn: 1723 init1: 1723 opt: 1789  Z-score: 77.5  bits: 24.2 E(): 3.1e+02
banded Smith-Waterman score: 1789; 80.3% identity (80.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : :: :: ::::::: :::::: :: ::  ::::::: :: ::::: :: 
v68    GCTACCGTTTTGGCGTATAGCATTTTCAAAGAAGGATTGCGAAATATCACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::::::::::::::: :: :::::::: ::::     ::::: ::::: ::::: 
v68    AATCCTATTGCCGTAAAACGAGGAATGGATAAAGCGGCAAGCGCGATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    ::::::::::: ::::::::: : :: ::::: ::::: ::::: :: :: 
v68    AAAAAATCAAGCAAAAAAGTCGGTGGCAAAGGTGAAATCGCTCAAGTTGCGACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: :: ::::::::::: :: ::    :::::::: ::::::::::::::::: :: :::
v68    GCGAATTCTGATGAAAATATCGGGAATCTTATCGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: ::::: :: :: :: :: :::::::::::  : :: :: ::::: 
v68    GATGGCGTTATCACCGTTGAGGAGGCAAAAGGGATTAATGATGAATTGAGCGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :: ::::::::::: :: ::::::::     : :::::::::::::::::::: ::::::
v68    GGAATGCAGTTTGACAGAGGCTATCTCAGCCCTTATTTTGTAACAAATACAGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::: :::::::::::::::: ::: : ::::: ::::: :::::::::::    ::::::
v68    ACAACACAGCTTGAAAATGCATATATCCTTTTGACAGACAAAAAAATCTCCTCAATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: :::::::: :::::::::::::: ::: :::: :: ::::::::: : ::: :::: 
v68    GATATTTTGCCATTGCTTGAAGCGACAATGAAAAGCGGGAAACCACTTTTGATCGTTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :: :: ::::: :: :: :: ::::::::::: ::::::::::: 
v68    GAGGATATTGAAGGTGAGGCGCTTACGACATTAGTTGTCAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
v68    AATGTCGCAGCGGTA
              550     

</pre>
<hr>
<A name=v29>
<pre>
>><a onClick="window.open('getRecord.php?id=v29',
                                'cpndb_record'); return false;" href="getRecord.php?id=v29" target=_"blank">v29</a> 1732 Helicobacter fennelliae                        (555 nt)
 initn: 1723 init1: 1723 opt: 1789  Z-score: 77.5  bits: 24.2 E(): 3.1e+02
banded Smith-Waterman score: 1789; 80.3% identity (80.3% similar) in 554 nt overlap (1-554:1-554)
<p>

               10        20        30        40        50        60
b10457 GCGACGGTGCTTGCATACAGCATTTACAAAGAGGGTTTAAGAAATATTACAGCTGGGGCT
       :: :: ::  : :: :: ::::::: :::::: :: ::  ::::::: :: ::::: :: 
v29    GCTACCGTTTTGGCGTATAGCATTTTCAAAGAAGGATTGCGAAATATCACTGCTGGTGCA
               10        20        30        40        50        60

               70        80        90       100       110       120
b10457 AATCCTATTGCCGTAAAACGCGGTATGGATAAGGCGGTGGCGGCGATTATTGATGAGCTG
       :::::::::::::::::::: :: :::::::: ::::     ::::: ::::: ::::: 
v29    AATCCTATTGCCGTAAAACGAGGAATGGATAAAGCGGCAAGCGCGATCATTGAAGAGCTT
               70        80        90       100       110       120

              130       140       150       160       170       180
b10457 AAAAAGATTAGCAAAAAAGTTGGTGGCAAAAGCGACATCGCACAAGTAGCGACAATCTCC
       :::::    ::::::::::: ::::::::: : :: ::::: ::::: ::::: :: :: 
v29    AAAAAATCAAGCAAAAAAGTCGGTGGCAAAGGTGAAATCGCTCAAGTTGCGACTATTTCG
              130       140       150       160       170       180

              190       200       210       220       230       240
b10457 GCAAACTCTGATGAAAACATTGGCTCACTTATCGCAGAAGCAATGGAAAAAGTCGGCAAA
       :: :: ::::::::::: :: ::    :::::::: ::::::::::::::::: :: :::
v29    GCGAATTCTGATGAAAATATCGGGAATCTTATCGCTGAAGCAATGGAAAAAGTAGGTAAA
              190       200       210       220       230       240

              250       260       270       280       290       300
b10457 GATGGTGTCATCACTGTTGAAGAAGCTAAGGGTATTAATGATGAGCTAAGTGTTGTTGAG
       ::::: :: ::::: ::::: :: :: :: :: :::::::::::  : :: :: ::::: 
v29    GATGGCGTTATCACCGTTGAGGAGGCAAAAGGGATTAATGATGAATTGAGCGTGGTTGAA
              250       260       270       280       290       300

              310       320       330       340       350       360
b10457 GGTATGCAGTTTGATAGGGGCTATCTTTCGGCATATTTTGTAACAAATACAGATAAAATG
       :: ::::::::::: :: ::::::::     : :::::::::::::::::::: ::::::
v29    GGAATGCAGTTTGACAGAGGCTATCTCAGCCCTTATTTTGTAACAAATACAGACAAAATG
              310       320       330       340       350       360

              370       380       390       400       410       420
b10457 ACAGCACAGCTTGAAAATGCCTATGTGCTTTTAACAGATAAAAAAATCTCAAATATGAAA
       ::: :::::::::::::::: ::: : ::::: ::::: :::::::::::    ::::::
v29    ACAACACAGCTTGAAAATGCATATATCCTTTTGACAGACAAAAAAATCTCCTCAATGAAA
              370       380       390       400       410       420

              430       440       450       460       470       480
b10457 GAGATTTTGCCTTTGCTTGAAGCGACTATGCAAAGTGGCAAACCACTTCTTATCATTGCT
       :: :::::::: :::::::::::::: ::: :::: :: ::::::::: : ::: :::: 
v29    GATATTTTGCCATTGCTTGAAGCGACAATGAAAAGCGGGAAACCACTTTTGATCGTTGCA
              430       440       450       460       470       480

              490       500       510       520       530       540
b10457 GAAGATATTGAGGGCGAAGCACTTACAACTTTGGTAGTCAATAAACTCCGTGGTGTGCTG
       :: :::::::: :: :: :: ::::: :: :: :: ::::::::::: ::::::::::: 
v29    GAGGATATTGAAGGTGAGGCGCTTACGACATTAGTTGTCAATAAACTTCGTGGTGTGCTT
              490       500       510       520       530       540

              550     
b10457 AATGTATCAGCCGTC
       :::::  :::: :: 
v29    AATGTCGCAGCGGTA
              550     

</pre>
<hr>
<p><pre>


555 residues in 1 query   sequences
10433008 residues in 18820 library sequences
 Scomplib [35.03]
 start: Mon Jun 17 01:01:34 2024 done: Mon Jun 17 01:01:36 2024
 Total Scan time:  1.410 Total Display time:  0.010

Function used was FASTA [version 35.03 Feb. 18, 2008]
</pre>