RECORD DETAILS
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b7801 |
| Chaperonin Group: | I |
| Deposit Date: | 2005-11-21 |
| Type: | ref |
| Type strain?: | no |
| Genus: | Mycobacterium |
| Species: | tuberculosis |
| Strain: | C |
| Lineage: | root; cellular organisms; Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium |
| Original ID: | - |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | NZ_AAKR01000007 |
| Peptide Genbank Accession: | ZP_00880216 |
| Best FASTA Match: | - |
| Date of FASTA search: | - |
| FASTA identity %: | - |
| Best BLASTP Match: | - |
| Date of BLASTP search: | - |
| BLASTP identity %: | - |
| Source: | Genbank |
| Notes: | From complete genome sequence. From the Broad Institute Genome Sequencing Platform database: "The C strain has been highly transmitted in New York City. In one study this strain was found to be more common among injection drug users and resistant to reactive nitrogen intermediates. (Friedman et al. J Infect Dis. 1997 Aug;176(2):478-84.)". Record is derived from shotgun sequence and is likely truncated at the N terminus. |
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Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
GTGTCCATCGCCAAGGAGATCGAGCTGGAGGATCCGTACGAGAAGATCGGCGCCGAGCTG GTCAAAGAGGTAGCCAAGAAGACCGATGACGTCGCCGGTGACGGCACCACGACGGCCACC GTGCTGGCCCAGGCGTTGGTTCGCGAGGGCCTGCGCAACGTCGCGGCCGGCGCCAACCCG CTCGGTCTCAAACGCGGCATCGAAAAGGCCGTGGAGAAGGTCACCGAGACCCTGCTCAAG GGCGCCAAGGAGGTCGAGACCAAGGAGCAGATTGCGGCCACCGCAGCGATTTCGGCGGGT GACCAGTCCATCGGTGACCTGATCGCCGAGGCGATGGACAAGGTGGGCAACGAGGGCGTC ATCACCGTCGAGGAGTCCAACACCTTTGGGCTGCAGCTCGAGCTCACCGAGGGTATGCGG TTCGACAAGGGCTACATCTCGGGGTACTTCGTGACCGACCCGGAGCGTCAGGAGGCGGTC CTGGAGGACCCCTACATCCTGCTGGTCAGCTCCAAGGTGTCCACTGTCAAGGATCTGCTG CCGCTGCTCGAGAAGGTCATCGGAGCCGGTAAGCCGCTGCTGATCATCGCCGAGGACGTC GAGGGCGAGGCGCTGTCCACCCTGGTCGTCAACAAGATCCGCGGCACCTTCAAGTCGGTG GCGGTCAAGGCTCCCGGCTTCGGCGACCGCCGCAAGGCGATGCTGCAGGATATGGCCATT CTCACCGGTGGTCAGGTGATCAGCGAAGAGGTCGGCCTGACGCTGGAGAACGCCGACCTG TCGCTGCTAGGCAAGGCCCGCAAGGTCGTGGTCACCAAGGACGAGACCACCATCGTCGAG GGCGCCGGTGACACCGACGCCATCGCCGGACGAGTGGCCCAGATCCGCCAGGAGATCGAG AACAGCGACTCCGACTACGACCGTGAGAAGCTGCAGGAGCGGCTGGCCAAGCTGGCCGGT GGTGTCGCGGTGATCAAGGCCGGTGCCGCCACCGAGGTCGAACTCAAGGAGCGCAAGCAC CGCATCGAGGATGCGGTTCGCAATGCCAAGGCCGCCGTCGAGGAGGGCATCGTCGCCGGT GGGGGTGTGACGCTGTTGCAAGCGGCCCCGACCCTGGACGAGCTGAAGCTCGAAGGCGAC GAGGCGACCGGCGCCAACATCGTGAAGGTGGCGCTGGAGGCCCCGCTGAAGCAGATCGCC TTCAACTCCGGGCTGGAGCCGGGCGTGGTGGCCGAGAAGGTGCGCAACCTGCCGGCTGGC CACGGACTGAACGCTCAGACCGGTGTCTACGAGGATCTGCTCGCTGCCGGCGTTGCTGAC CCGGTCAAGGTGACCCGTTCGGCGCTGCAGAATGCGGCGTCCATCGCGGGGCTGTTCCTG ACCACCGAGGCCGTCGTTGCCGACAAGCCGGAAAAGGAGAAGGCTTCCGTTCCCGGTGGC GGCGACATGGGTGGCATGGATTTCTGA |
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Full Peptide Sequence: BLAST this sequence: cpnDB | |
MSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVAAGANP LGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAISAGDQSIGDLIAEAMDKVGNEGV ITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLL PLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAI LTGGQVISEEVGLTLENADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIE NSDSDYDREKLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEGIVAG GGVTLLQAAPTLDELKLEGDEATGANIVKVALEAPLKQIAFNSGLEPGVVAEKVRNLPAG HGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTTEAVVADKPEKEKASVPGG GDMGGMDF |
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Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCCACCGTGCTGGCCCAGGCGTTGGTTCGCGAGGGCCTGCGCAACGTCGCGGCCGGCGCC AACCCGCTCGGTCTCAAACGCGGCATCGAAAAGGCCGTGGAGAAGGTCACCGAGACCCTG CTCAAGGGCGCCAAGGAGGTCGAGACCAAGGAGCAGATTGCGGCCACCGCAGCGATTTCG GCGGGTGACCAGTCCATCGGTGACCTGATCGCCGAGGCGATGGACAAGGTGGGCAACGAG GGCGTCATCACCGTCGAGGAGTCCAACACCTTTGGGCTGCAGCTCGAGCTCACCGAGGGT ATGCGGTTCGACAAGGGCTACATCTCGGGGTACTTCGTGACCGACCCGGAGCGTCAGGAG GCGGTCCTGGAGGACCCCTACATCCTGCTGGTCAGCTCCAAGGTGTCCACTGTCAAGGAT CTGCTGCCGCTGCTCGAGAAGGTCATCGGAGCCGGTAAGCCGCTGCTGATCATCGCCGAG GACGTCGAGGGCGAGGCGCTGTCCACCCTGGTCGTCAACAAGATCCGCGGCACCTTCAAG TCGGTGGCGGTC |
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Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKEVETKEQIAATAAIS AGDQSIGDLIAEAMDKVGNEGVITVEESNTFGLQLELTEGMRFDKGYISGYFVTDPERQE AVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFK SVAV |