Chaperonin ID: b18667
Chaperonin Group: I
Deposit Date: 2011-03-12
Type: cli
Type strain?: no
Genus: Riemerella
Species: anatipestifer
Strain: RA-GD
Lineage: root; cellular organisms; Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteria; Flavobacteriales; Flavobacteriaceae; Riemerella
Original ID: -
CUTC ID: -
Nucleotide Genbank Accession: CP002562
Peptide Genbank Accession: ADZ12961
Best FASTA Match: b22888 Riemerella anatipestifer RA-CH-2 (see fasta results)
Date of FASTA search: 2024-07-22
FASTA identity %: 100.000
Best BLASTP Match: b22891 Riemerella anatipestifer RA-CH-2 (see blastp results)
Date of BLASTP search: 2024-07-22
BLASTP identity %: 100.000
Source: Genbank
Notes: Isolated from an infected duck.
Full Nucleotide Sequence:
BLAST this sequence:
cpnDB | 		ATGGCAAAAGATATTAAATTTGATATAGAATCAAGAGACGCACTTAAAAGAGGTGTAGAT
GCATTAGCAAATGCAGTTAAGGTAACTTTAGGACCTAAAGGTAGAAATGTGGTTATAGAA
AAATCTTTCGGTGCTCCACATGTAACTAAAGATGGGGTTTCTGTGGCTAAAGAGATAGAG
CTAGAGGACAAAGTAGAAAATATGGGAGCTCAAATGGTAAAAGAAGTAGCATCTAAAACC
AACGATTTGGCAGGAGATGGTACCACTACAGCTACCGTATTAGCGCAAGCTATCGTGAGA
GAAGGTCTTAAAAATGTGGCTGCTGGAGCTAATCCTATGGATTTAAAAAGAGGGATTGAC
AAGGCAGTTTCTACTGTAATAGAAAACTTAAAATCTCAATCTCAAGCAGTAGGAGATTCT
TCTGAAAAAATCAAGCAAGTAGCTTCTATTTCTGCAAATAACGATGATGCAATAGGTAGC
CTTATCGCTGAAGCTTTTGGTAAAGTAGGTAAAGAAGGTGTAATTACTGTGGAAGAGGCT
AAAGGTACAGATACTACGGTAGATGTGGTAGAAGGTATGCAGTTTGACAGAGGTTATCAG
TCGCCTTATTTCGTTACAAATCCAGACAAAATGGTAGCGGAGTTAGACAATCCGTATATT
CTTTTAGTAGAGAAGAAAATTTCTTCTATGAAAGAATTATTGCCTGTTTTAGAGCCAGTA
GCCCAGCAAGGTAAAGCTTTACTTATCATTTCAGAAGAGGTAGAAGGTGAGGCGTTGGCA
ACATTAGTGGTTAACAAACTAAGAGGTTCTTTAAAAATCGCTGCAGTAAAAGCTCCAGGA
TTTGGAGATAGAAGAAAGGCAATGTTAGAAGATATTGCTATCTTAACGGGTGGACAAGTA
GTTTCTGAAGAAAGAGGCTTTACTATGGATAATGTAACTATTGATATGTTAGGTAGAGCA
GAAAAAGTAGTTATAGATAAAGACAATACTACGGTAGTAAATGGTGCTGGAGATGAGGCT
CAAATTAAAGCTAGAGTAAATCAAATCAAAGCTCAAATGGAAAGCACTACTTCTGACTAC
GATAGAGAAAAATTACAAGAAAGATTGGCTAAATTAGCTGGTGGTGTAGCAGTTCTTTAT
GTAGGTGCAGCTTCTGAAGTAGAAATGAAGGAGAAGAAGGATAGAGTAGATGACGCATTA
CATGCTACTAGAGCGGCAGTGGAAGAAGGTATCGTAGCTGGTGGAGGTGTAGCTTTGGTA
AGAAGCATTGCTTCTCTTGAGAACCTTAACGGTGCTAACCAAGATGAAAACACAGGTATT
AAAATAGTTAAAAGAGCTATAGAAGAACCATTGAGACAAATCGTAGCTAATGCAGGTGGC
GAAGGTTCTGTAGTGGTGGCTAAAGTTTCAGAAGGTAAAGGAGACTTCGGATACAATGCT
AAAACAGATGAGTATGTTAATATGCTAGAAGCAGGGATTATAGACCCTACCAAAGTGACT
AGAGTAGCATTAGAAAATGCAGCTTCTGTGGCTGGTATGCTATTAACTACGGAGTGTGTA
ATTACAGAACTACCTAAAGAAGAATCTGCAATGCCACCAATGGGAGGCGGAATGCCAGGT
ATGATGTAA
Full Peptide Sequence:
BLAST this sequence:
cpnDB | 		MAKDIKFDIESRDALKRGVDALANAVKVTLGPKGRNVVIEKSFGAPHVTKDGVSVAKEIE
LEDKVENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGID
KAVSTVIENLKSQSQAVGDSSEKIKQVASISANNDDAIGSLIAEAFGKVGKEGVITVEEA
KGTDTTVDVVEGMQFDRGYQSPYFVTNPDKMVAELDNPYILLVEKKISSMKELLPVLEPV
AQQGKALLIISEEVEGEALATLVVNKLRGSLKIAAVKAPGFGDRRKAMLEDIAILTGGQV
VSEERGFTMDNVTIDMLGRAEKVVIDKDNTTVVNGAGDEAQIKARVNQIKAQMESTTSDY
DREKLQERLAKLAGGVAVLYVGAASEVEMKEKKDRVDDALHATRAAVEEGIVAGGGVALV
RSIASLENLNGANQDENTGIKIVKRAIEEPLRQIVANAGGEGSVVVAKVSEGKGDFGYNA
KTDEYVNMLEAGIIDPTKVTRVALENAASVAGMLLTTECVITELPKEESAMPPMGGGMPG
MM
Nucleotide UT Sequence:
BLAST this sequence:
cpnDB | 		GCTACCGTATTAGCGCAAGCTATCGTGAGAGAAGGTCTTAAAAATGTGGCTGCTGGAGCT
AATCCTATGGATTTAAAAAGAGGGATTGACAAGGCAGTTTCTACTGTAATAGAAAACTTA
AAATCTCAATCTCAAGCAGTAGGAGATTCTTCTGAAAAAATCAAGCAAGTAGCTTCTATT
TCTGCAAATAACGATGATGCAATAGGTAGCCTTATCGCTGAAGCTTTTGGTAAAGTAGGT
AAAGAAGGTGTAATTACTGTGGAAGAGGCTAAAGGTACAGATACTACGGTAGATGTGGTA
GAAGGTATGCAGTTTGACAGAGGTTATCAGTCGCCTTATTTCGTTACAAATCCAGACAAA
ATGGTAGCGGAGTTAGACAATCCGTATATTCTTTTAGTAGAGAAGAAAATTTCTTCTATG
AAAGAATTATTGCCTGTTTTAGAGCCAGTAGCCCAGCAAGGTAAAGCTTTACTTATCATT
TCAGAAGAGGTAGAAGGTGAGGCGTTGGCAACATTAGTGGTTAACAAACTAAGAGGTTCT
TTAAAAATCGCTGCAGTA
Peptide UT Sequence:
BLAST this sequence:
cpnDB | 		ATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVSTVIENLKSQSQAVGDSSEKIKQVASI
SANNDDAIGSLIAEAFGKVGKEGVITVEEAKGTDTTVDVVEGMQFDRGYQSPYFVTNPDK
MVAELDNPYILLVEKKISSMKELLPVLEPVAQQGKALLIISEEVEGEALATLVVNKLRGS
LKIAAV