Chaperonin ID: b12029
Chaperonin Group: I
Deposit Date: 2008-05-25
Type: cli
Type strain?: no
Genus: Helicobacter
Species: pylori
Strain: Shi470
Lineage: root; cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter
Original ID: -
CUTC ID: -
Nucleotide Genbank Accession: NC_010698
Peptide Genbank Accession: YP_001909507
Best FASTA Match: b20622 Helicobacter pylori Shi169 (see fasta results)
Date of FASTA search: 2024-07-22
FASTA identity %: 100.000
Best BLASTP Match: Unpublished data. Please contact us if you require more information.
Date of BLASTP search: 2024-07-22
BLASTP identity %: 100.000
Source: Genbank
Notes: Helicobacter pylori Shi470 is a clinical isolate from gastric antrum from Amerindian resident of remote Amazonian village of Shimaa, Peru.
Full Nucleotide Sequence:
BLAST this sequence:
cpnDB | 		ATGGCAAAAGAAATCAAATTTTCAGATAGCGCAAGAAACCTTTTGTTTGAAGGCGTGAGA
CAACTCCATGACGCTGTCAAAGTAACCATGGGGCCAAGAGGTAGGAATGTGTTGATCCAA
AAAAGCTATGGCGCTCCAAGCATCACCAAAGACGGCGTGAGCGTGGCTAAAGAGATTGAA
TTAAGTTGCCCAGTGGCTAATATGGGTGCTCAACTCGTTAAAGAAGTAGCGAGCAAAACC
GCTGATGCTGCCGGCGATGGCACGACCACAGCGACCGTGCTTGCTTATAGCATTTTTAAA
GAGGGCTTGAGGAATATCACGGCTGGGGCTAACCCTATTGAAGTGAAACGAGGCATGGAT
AAAGCCGCTGAAGCCATTATTAATGAGCTTAAAAAAGCGAGCAAAAAAGTAGGCGGTAAA
GAAGAAATCACCCAAGTAGCGACCATTTCTGCAAACTCTGATCACAATATCGGGAAACTC
ATCGCTGACGCTATGGAAAAAGTGGGTAAAGACGGCGTGATCACCGTTGAAGAAGCTAAG
GGCATTGAAGATGAATTAGATGTCGTAGAGGGCATGCAATTTGATAGAGGCTATCTCTCC
CCTTATTTTGTAACAAACGCTGAGAAAATGACCGCTCAATTGGATAACGCTTACATCCTT
TTAACGGATAAAAAAATCTCTAGCATGAAAGACATTCTCCCACTACTAGAAAAAACCATG
AAAGAGGGCAAACCGCTTTTAATCATCGCTGAAGACATTGAGGGCGAAGCTTTAACGACT
CTAGTGGTGAATAAATTAAGAGGCGTGTTGAATATCGCAGCGGTTAAGGCTCCAGGCTTT
GGGGACAGAAGAAAAGAAATGCTCAAAGACATCGCTGTTTTAACCGGCGGTCAAGTTATT
AGCGAAGAATTAGGCTTGACTTTAGAAAACGCTGAAGTGGAGTTTTTAGGCAAAGCCGGA
AGGATTGTGATTGACAAAGACAACACCACGATCGTAGATGGCAAAGGCCATAGCCATGAT
GTCAAAGACAGAGTCGCGCAAATCAAAACCCAAATTGCAAGCACGACAAGCGATTATGAC
AAAGAAAAATTGCAAGAAAGATTGGCTAAACTCTCTGGCGGTGTGGCTGTGATTAAAGTG
GGCGCTGCGAGTGAAGTGGAAATGAAAGAGAAAAAAGACCGGGTTGATGACGCGTTGAGC
GCGACTAAAGCGGCTGTTGAAGAAGGCATTGTTATTGGCGGCGGTGCGGCTCTCATTCGT
GCGGCTCAAAAAGTGCATTTGAATTTACACGATGATGAAAAAGTGGGCTATGAAATCATC
ATGCGCGCCATTAAAGCCCCATTAGCTCAAATCGCTATCAATGCCGGTTATGATGGCGGT
GTGGTCGTGAATGAAGTGCAAAAACACGAAGGGCATTTTGGTTTTAACGCTAGCAATGGC
AAGTATGTGGATATGTTTAAAGAAGGCATTATTGACCCCTTAAAAGTAGAAAGGATCGCT
TTGCAAAATGCGGTTTCGGTTTCAAGCCTGCTTTTAACCACAGAAGCCACCGTGCATGAA
ATCAAAGAAGAAAAAGCAACCCCAGCAATGCCTGATATGGGTGGCATGGGCGGTATGGGA
GGCATGGGCGGCATGATGTAA
Full Peptide Sequence:
BLAST this sequence:
cpnDB | 		MAKEIKFSDSARNLLFEGVRQLHDAVKVTMGPRGRNVLIQKSYGAPSITKDGVSVAKEIE
LSCPVANMGAQLVKEVASKTADAAGDGTTTATVLAYSIFKEGLRNITAGANPIEVKRGMD
KAAEAIINELKKASKKVGGKEEITQVATISANSDHNIGKLIADAMEKVGKDGVITVEEAK
GIEDELDVVEGMQFDRGYLSPYFVTNAEKMTAQLDNAYILLTDKKISSMKDILPLLEKTM
KEGKPLLIIAEDIEGEALTTLVVNKLRGVLNIAAVKAPGFGDRRKEMLKDIAVLTGGQVI
SEELGLTLENAEVEFLGKAGRIVIDKDNTTIVDGKGHSHDVKDRVAQIKTQIASTTSDYD
KEKLQERLAKLSGGVAVIKVGAASEVEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIR
AAQKVHLNLHDDEKVGYEIIMRAIKAPLAQIAINAGYDGGVVVNEVQKHEGHFGFNASNG
KYVDMFKEGIIDPLKVERIALQNAVSVSSLLLTTEATVHEIKEEKATPAMPDMGGMGGMG
GMGGMM
Nucleotide UT Sequence:
BLAST this sequence:
cpnDB | 		GCGACCGTGCTTGCTTATAGCATTTTTAAAGAGGGCTTGAGGAATATCACGGCTGGGGCT
AACCCTATTGAAGTGAAACGAGGCATGGATAAAGCCGCTGAAGCCATTATTAATGAGCTT
AAAAAAGCGAGCAAAAAAGTAGGCGGTAAAGAAGAAATCACCCAAGTAGCGACCATTTCT
GCAAACTCTGATCACAATATCGGGAAACTCATCGCTGACGCTATGGAAAAAGTGGGTAAA
GACGGCGTGATCACCGTTGAAGAAGCTAAGGGCATTGAAGATGAATTAGATGTCGTAGAG
GGCATGCAATTTGATAGAGGCTATCTCTCCCCTTATTTTGTAACAAACGCTGAGAAAATG
ACCGCTCAATTGGATAACGCTTACATCCTTTTAACGGATAAAAAAATCTCTAGCATGAAA
GACATTCTCCCACTACTAGAAAAAACCATGAAAGAGGGCAAACCGCTTTTAATCATCGCT
GAAGACATTGAGGGCGAAGCTTTAACGACTCTAGTGGTGAATAAATTAAGAGGCGTGTTG
AATATCGCAGCGGTT
Peptide UT Sequence:
BLAST this sequence:
cpnDB | 		ATVLAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGKEEITQVATIS
ANSDHNIGKLIADAMEKVGKDGVITVEEAKGIEDELDVVEGMQFDRGYLSPYFVTNAEKM
TAQLDNAYILLTDKKISSMKDILPLLEKTMKEGKPLLIIAEDIEGEALTTLVVNKLRGVL
NIAAV