If your query sequence is a peptide sequence, use BLASTP (standard protein BLAST) to query our database of cpn60 protein sequences. You can select the number of scores and the number of alignments that you wish to have included in your results file.
References:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
For more detailed information, please follow the link(s) below:
http://www.ncbi.nlm.nih.gov/books/NBK21097/
Related topics on cpnDB: