RECORD DETAILS
For pacc CP001154, see also: b13588
Add Record To Cart - Printer-friendly version - Close Window| Chaperonin ID: | b13587 |
| Chaperonin Group: | I |
| Deposit Date: | 2009-04-25 |
| Type: | cli |
| Type strain?: | no |
| Genus: | Laribacter |
| Species: | hongkongensis |
| Strain: | HLHK9 |
| Lineage: | root; cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Laribacter |
| Original ID: | - |
| CUTC ID: | - |
| Nucleotide Genbank Accession: | CP001154 |
| Peptide Genbank Accession: | ACO73653 |
| Best FASTA Match: | b33056 Microvirgula sp. AG722 (see fasta results) |
| Date of FASTA search: | 2024-07-22 |
| FASTA identity %: | 90.100 |
| Best BLASTP Match: | b28118 Aquaspirillum serpens DSM 68 (see blastp results) |
| Date of BLASTP search: | 2024-07-22 |
| BLASTP identity %: | 94.054 |
| Source: | Genbank |
| Notes: | HLHK9 was isolated from a case of gastroenteritis in Hong Kong and will be used for comparative analysis. |
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Full Nucleotide Sequence: BLAST this sequence: cpnDB | |
ATGGCTGCTAAAGACGTCAAATTTGGTGATTCCGCCCGTTCCAAGATGGTGGTGGGTGTC AATATCCTGGCCGATGCCGTCAAGACCACGCTCGGCCCGAAAGGCCGCAACGTCGTGCTG GAACGCAGCTACGGCGCTCCGACCATCACCAAGGACGGCGTGTCCGTTGCCAAGGAAATC GAACTGAAGGACAAGTTCGAGAACATGGGCGCCCAGATGGTCAAGGAAGTGGCTTCCAAG ACCAACGACGTCGCCGGTGACGGCACCACCACCGCCACCGTGCTGGCCCAGGCCATCGTG CAGGAAGGCATGAAGTACGTCGCTGCCGGCATGAACCCGATGGACCTCAAGCGCGGCATC GACAAGGCCGTCGTGGCACTGGTCGAAGAAATCAAGAACATCGCCAAGCCGTGCGCCACC ACCAAGGAAATCGCCCAGGTCGGCGCCATCTCCGCCAACAGCGACACCGTGATCGGTGAA AAGATCGCTGCGGCCATGGAAAAGGTCGGCAAGGAAGGCGTGATTACCGTTGAAGACGGT TCGGGTCTGGAAGACGAACTCGACGTCGTCGAAGGCATGCAGTTCGACCGCGGCTACCTC AGCCCGTACTTCATCAACCAGCCGGAAAAGCAGATCGCCCAGCTCGACAATCCGTACGTG CTGCTGTGCGACAAGAAGATCAGCAACATCCGCGAACTGCTGCCGACCCTGGAGCAAGTC GCCAAGTCCGGCCGTCCGCTGCTGATCATCGCTGAAGACGTGGAAGGCGAAGCACTGGCC ACGCTGGTGGTCAACAACATGCGCGGCATCCTCAAGACCGTGGCCGTCAAGGCTCCGGGC TTCGGCGACCGTCGCAAGGCCATGCTGGAAGACATCGCCATCCTGACCGGCGGCACCGTG ATTGCCGAAGAAGTCGGCCTGACGCTGGAAAAGGTGTCACTCGAGATGCTGGGTCAGGCC AAGCGTGTTGAAGTGGCCAAGGAAAACACCACCCTCATCGACGGCGCCGGTTCCGAAGCC GCCATCAAGGCCCGTGTCGAACAGATCCGTGCCCTGATCGAAACCGCAACCAGCGACTAC GACCGCGAAAAGATGCAGGAACGTCTGGCCAAGCTGGCCGGTGGTGTGGCCGTGATCAAG GTCGGTGCTGCGACCGAAGTCGAAATGAAGGAAAAGAAGGCCCGCGTCGAAGACGCCCTG CACGCAACCCGCGCTGCCGTGGAAGAAGGCATCGTGGCCGGTGGCGGCGTGGCCCTGCTG CGCGCCCGTGCCAACCTGAAGGAAGTGGCCACCATCAACGCCGAGCAGGCAGCCGGTGTG CAGATCGTGATGCGCGCGATCGAATCGCCGCTGCGCCAGATCGTGGCCAACGCCGGTGAT GAGCCGAGCGTGGTGGTCAACAAGGTGTACGAAGGCAGCGGCAACTTCGGTTACAACGCT GCAACCGGCGAATACGGCGACCTGGTGGAAATGGGCGTGCTCGACCCGGCCAAGGTGACC CGTTCGGCCCTGCAACACGCTGCTTCGGTGGCTGGCCTGATGCTGACCACCGACTGCATG GTGGCCGAGCTGCCGGAAGACAAGCCGGCTGCTCCGGACATGGGCGGCATGGGTGGCATG GGCGGCATGATGTAA |
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Full Peptide Sequence: BLAST this sequence: cpnDB | |
MAAKDVKFGDSARSKMVVGVNILADAVKTTLGPKGRNVVLERSYGAPTITKDGVSVAKEI ELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQAIVQEGMKYVAAGMNPMDLKRGI DKAVVALVEEIKNIAKPCATTKEIAQVGAISANSDTVIGEKIAAAMEKVGKEGVITVEDG SGLEDELDVVEGMQFDRGYLSPYFINQPEKQIAQLDNPYVLLCDKKISNIRELLPTLEQV AKSGRPLLIIAEDVEGEALATLVVNNMRGILKTVAVKAPGFGDRRKAMLEDIAILTGGTV IAEEVGLTLEKVSLEMLGQAKRVEVAKENTTLIDGAGSEAAIKARVEQIRALIETATSDY DREKMQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGIVAGGGVALL RARANLKEVATINAEQAAGVQIVMRAIESPLRQIVANAGDEPSVVVNKVYEGSGNFGYNA ATGEYGDLVEMGVLDPAKVTRSALQHAASVAGLMLTTDCMVAELPEDKPAAPDMGGMGGM GGMM |
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Nucleotide UT Sequence: BLAST this sequence: cpnDB | |
GCCACCGTGCTGGCCCAGGCCATCGTGCAGGAAGGCATGAAGTACGTCGCTGCCGGCATG AACCCGATGGACCTCAAGCGCGGCATCGACAAGGCCGTCGTGGCACTGGTCGAAGAAATC AAGAACATCGCCAAGCCGTGCGCCACCACCAAGGAAATCGCCCAGGTCGGCGCCATCTCC GCCAACAGCGACACCGTGATCGGTGAAAAGATCGCTGCGGCCATGGAAAAGGTCGGCAAG GAAGGCGTGATTACCGTTGAAGACGGTTCGGGTCTGGAAGACGAACTCGACGTCGTCGAA GGCATGCAGTTCGACCGCGGCTACCTCAGCCCGTACTTCATCAACCAGCCGGAAAAGCAG ATCGCCCAGCTCGACAATCCGTACGTGCTGCTGTGCGACAAGAAGATCAGCAACATCCGC GAACTGCTGCCGACCCTGGAGCAAGTCGCCAAGTCCGGCCGTCCGCTGCTGATCATCGCT GAAGACGTGGAAGGCGAAGCACTGGCCACGCTGGTGGTCAACAACATGCGCGGCATCCTC AAGACCGTGGCCGTC |
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Peptide UT Sequence: BLAST this sequence: cpnDB | |
ATVLAQAIVQEGMKYVAAGMNPMDLKRGIDKAVVALVEEIKNIAKPCATTKEIAQVGAIS ANSDTVIGEKIAAAMEKVGKEGVITVEDGSGLEDELDVVEGMQFDRGYLSPYFINQPEKQ IAQLDNPYVLLCDKKISNIRELLPTLEQVAKSGRPLLIIAEDVEGEALATLVVNNMRGIL KTVAV |